Strain Fitness in Pseudomonas sp. S08-1 around OH686_04450

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_04440 and OH686_04445 are separated by 131 nucleotidesOH686_04445 and OH686_04450 are separated by 56 nucleotidesOH686_04450 and OH686_04455 are separated by 36 nucleotides OH686_04440: OH686_04440 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 923,546 to 924,421 _04440 OH686_04445: OH686_04445 - Phosphoribosylanthranilate isomerase , at 924,553 to 925,173 _04445 OH686_04450: OH686_04450 - tRNA pseudouridine(38-40) synthase, at 925,230 to 926,054 _04450 OH686_04455: OH686_04455 - Probable type IV pilus assembly FimV-related transmembrane protein, at 926,091 to 928,949 _04455 Position (kb) 925 926 927Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 924.435 kb on - strandat 924.523 kb on - strandat 924.647 kb on + strand, within OH686_04445at 924.647 kb on + strand, within OH686_04445at 924.647 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.785 kb on + strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.786 kb on - strand, within OH686_04445at 924.789 kb on + strand, within OH686_04445at 924.789 kb on + strand, within OH686_04445at 924.841 kb on - strand, within OH686_04445at 924.875 kb on + strand, within OH686_04445at 924.875 kb on + strand, within OH686_04445at 924.875 kb on + strand, within OH686_04445at 924.875 kb on + strand, within OH686_04445at 924.875 kb on + strand, within OH686_04445at 924.876 kb on - strand, within OH686_04445at 924.876 kb on - strand, within OH686_04445at 924.876 kb on - strand, within OH686_04445at 924.876 kb on - strand, within OH686_04445at 925.076 kb on + strand, within OH686_04445at 925.077 kb on - strand, within OH686_04445at 925.077 kb on - strand, within OH686_04445at 925.077 kb on - strand, within OH686_04445at 925.077 kb on - strand, within OH686_04445at 925.077 kb on - strand, within OH686_04445at 925.077 kb on - strand, within OH686_04445at 925.090 kb on + strand, within OH686_04445at 925.210 kb on - strandat 925.277 kb on - strandat 925.325 kb on - strand, within OH686_04450at 925.479 kb on + strand, within OH686_04450at 925.479 kb on + strand, within OH686_04450at 925.479 kb on + strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.480 kb on - strand, within OH686_04450at 925.589 kb on + strand, within OH686_04450at 925.642 kb on + strand, within OH686_04450at 925.642 kb on + strand, within OH686_04450at 925.643 kb on - strand, within OH686_04450at 925.680 kb on + strand, within OH686_04450at 925.680 kb on + strand, within OH686_04450at 925.680 kb on + strand, within OH686_04450at 925.680 kb on + strand, within OH686_04450at 925.680 kb on + strand, within OH686_04450at 925.681 kb on - strand, within OH686_04450at 925.681 kb on - strand, within OH686_04450at 925.681 kb on - strand, within OH686_04450at 925.681 kb on - strand, within OH686_04450at 925.681 kb on - strand, within OH686_04450at 925.681 kb on - strand, within OH686_04450at 925.693 kb on + strand, within OH686_04450at 925.693 kb on + strand, within OH686_04450at 925.693 kb on + strand, within OH686_04450at 925.693 kb on + strand, within OH686_04450at 925.693 kb on + strand, within OH686_04450at 925.693 kb on + strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.694 kb on - strand, within OH686_04450at 925.702 kb on + strand, within OH686_04450at 925.702 kb on + strand, within OH686_04450at 925.702 kb on + strand, within OH686_04450at 925.702 kb on + strand, within OH686_04450at 925.702 kb on + strand, within OH686_04450at 925.702 kb on + strand, within OH686_04450at 925.703 kb on - strand, within OH686_04450at 925.703 kb on - strand, within OH686_04450at 926.011 kb on + strandat 926.011 kb on + strandat 926.011 kb on + strandat 926.011 kb on + strandat 926.011 kb on + strandat 926.012 kb on - strandat 926.012 kb on - strandat 926.012 kb on - strandat 926.012 kb on - strandat 926.012 kb on - strandat 926.203 kb on + strandat 926.203 kb on + strandat 926.204 kb on - strandat 926.204 kb on - strandat 926.204 kb on - strandat 926.204 kb on - strandat 926.204 kb on - strandat 926.204 kb on - strandat 926.204 kb on - strandat 926.291 kb on + strandat 926.291 kb on + strandat 926.291 kb on + strandat 926.292 kb on - strandat 926.292 kb on - strandat 926.292 kb on - strandat 927.040 kb on + strand, within OH686_04455at 927.041 kb on - strand, within OH686_04455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
924,435 - -0.0
924,523 - +0.8
924,647 + OH686_04445 0.15 -2.9
924,647 + OH686_04445 0.15 -1.5
924,647 + OH686_04445 0.15 -2.2
924,785 + OH686_04445 0.37 -2.8
924,785 + OH686_04445 0.37 -1.9
924,785 + OH686_04445 0.37 -4.3
924,785 + OH686_04445 0.37 -3.1
924,785 + OH686_04445 0.37 -3.9
924,785 + OH686_04445 0.37 -2.7
924,785 + OH686_04445 0.37 -0.4
924,785 + OH686_04445 0.37 -3.0
924,785 + OH686_04445 0.37 -4.5
924,785 + OH686_04445 0.37 -2.8
924,785 + OH686_04445 0.37 -2.4
924,785 + OH686_04445 0.37 -2.6
924,785 + OH686_04445 0.37 -2.3
924,785 + OH686_04445 0.37 -3.9
924,785 + OH686_04445 0.37 -3.8
924,786 - OH686_04445 0.38 -4.1
924,786 - OH686_04445 0.38 -3.6
924,786 - OH686_04445 0.38 -2.5
924,786 - OH686_04445 0.38 -2.1
924,786 - OH686_04445 0.38 -2.5
924,786 - OH686_04445 0.38 -3.4
924,786 - OH686_04445 0.38 -4.7
924,786 - OH686_04445 0.38 -2.6
924,786 - OH686_04445 0.38 -3.1
924,786 - OH686_04445 0.38 -3.0
924,789 + OH686_04445 0.38 -3.6
924,789 + OH686_04445 0.38 -0.0
924,841 - OH686_04445 0.46 -1.5
924,875 + OH686_04445 0.52 -3.0
924,875 + OH686_04445 0.52 -2.4
924,875 + OH686_04445 0.52 -3.5
924,875 + OH686_04445 0.52 -3.6
924,875 + OH686_04445 0.52 -2.7
924,876 - OH686_04445 0.52 -2.8
924,876 - OH686_04445 0.52 -2.7
924,876 - OH686_04445 0.52 -2.7
924,876 - OH686_04445 0.52 -3.2
925,076 + OH686_04445 0.84 -2.7
925,077 - OH686_04445 0.84 -2.8
925,077 - OH686_04445 0.84 -3.0
925,077 - OH686_04445 0.84 -4.2
925,077 - OH686_04445 0.84 -3.3
925,077 - OH686_04445 0.84 -2.5
925,077 - OH686_04445 0.84 -2.7
925,090 + OH686_04445 0.86 -4.6
925,210 - +0.3
925,277 - +0.3
925,325 - OH686_04450 0.12 +0.1
925,479 + OH686_04450 0.30 -0.6
925,479 + OH686_04450 0.30 -1.2
925,479 + OH686_04450 0.30 -0.4
925,480 - OH686_04450 0.30 -1.0
925,480 - OH686_04450 0.30 -0.9
925,480 - OH686_04450 0.30 -0.4
925,480 - OH686_04450 0.30 +0.2
925,480 - OH686_04450 0.30 -0.4
925,480 - OH686_04450 0.30 -0.5
925,480 - OH686_04450 0.30 +0.0
925,589 + OH686_04450 0.44 -1.6
925,642 + OH686_04450 0.50 -1.6
925,642 + OH686_04450 0.50 -0.8
925,643 - OH686_04450 0.50 +0.1
925,680 + OH686_04450 0.55 -1.0
925,680 + OH686_04450 0.55 -0.4
925,680 + OH686_04450 0.55 -1.7
925,680 + OH686_04450 0.55 -1.3
925,680 + OH686_04450 0.55 -0.1
925,681 - OH686_04450 0.55 -0.6
925,681 - OH686_04450 0.55 -0.4
925,681 - OH686_04450 0.55 +0.4
925,681 - OH686_04450 0.55 -1.5
925,681 - OH686_04450 0.55 +0.5
925,681 - OH686_04450 0.55 -0.3
925,693 + OH686_04450 0.56 -0.2
925,693 + OH686_04450 0.56 -0.4
925,693 + OH686_04450 0.56 -0.4
925,693 + OH686_04450 0.56 -0.3
925,693 + OH686_04450 0.56 -0.5
925,693 + OH686_04450 0.56 +1.0
925,694 - OH686_04450 0.56 +0.1
925,694 - OH686_04450 0.56 -1.2
925,694 - OH686_04450 0.56 -0.1
925,694 - OH686_04450 0.56 -1.1
925,694 - OH686_04450 0.56 +0.4
925,694 - OH686_04450 0.56 -0.5
925,694 - OH686_04450 0.56 -0.3
925,702 + OH686_04450 0.57 -1.2
925,702 + OH686_04450 0.57 -0.3
925,702 + OH686_04450 0.57 -0.0
925,702 + OH686_04450 0.57 -0.6
925,702 + OH686_04450 0.57 -0.7
925,702 + OH686_04450 0.57 -0.6
925,703 - OH686_04450 0.57 -0.5
925,703 - OH686_04450 0.57 +0.1
926,011 + -0.8
926,011 + +0.5
926,011 + -0.2
926,011 + +0.9
926,011 + -1.2
926,012 - -0.6
926,012 - -0.2
926,012 - +0.3
926,012 - -0.6
926,012 - -1.0
926,203 + +0.0
926,203 + +0.4
926,204 - -0.0
926,204 - +0.0
926,204 - -0.3
926,204 - +0.5
926,204 - -0.4
926,204 - +0.0
926,204 - +1.0
926,291 + +0.5
926,291 + -1.4
926,291 + -0.1
926,292 - +1.2
926,292 - +0.1
926,292 - +0.3
927,040 + OH686_04455 0.33 -0.9
927,041 - OH686_04455 0.33 -0.6

Or see this region's nucleotide sequence