Strain Fitness in Pseudomonas sp. S08-1 around OH686_04405

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04400 and OH686_04405 are separated by 273 nucleotidesOH686_04405 and OH686_04410 are separated by 5 nucleotides OH686_04400: OH686_04400 - hypothetical protein, at 912,661 to 915,294 _04400 OH686_04405: OH686_04405 - hypothetical protein, at 915,568 to 916,212 _04405 OH686_04410: OH686_04410 - type II secretion system protein D, at 916,218 to 918,179 _04410 Position (kb) 915 916 917Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 914.613 kb on - strand, within OH686_04400at 914.613 kb on - strand, within OH686_04400at 914.613 kb on - strand, within OH686_04400at 914.613 kb on - strand, within OH686_04400at 914.678 kb on + strand, within OH686_04400at 914.678 kb on + strand, within OH686_04400at 914.678 kb on + strand, within OH686_04400at 914.678 kb on + strand, within OH686_04400at 914.678 kb on + strand, within OH686_04400at 914.678 kb on + strand, within OH686_04400at 914.679 kb on - strand, within OH686_04400at 914.679 kb on - strand, within OH686_04400at 914.679 kb on - strand, within OH686_04400at 914.679 kb on - strand, within OH686_04400at 914.679 kb on - strand, within OH686_04400at 914.925 kb on + strand, within OH686_04400at 914.925 kb on + strand, within OH686_04400at 914.926 kb on - strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.927 kb on + strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.928 kb on - strand, within OH686_04400at 914.966 kb on + strand, within OH686_04400at 914.966 kb on + strand, within OH686_04400at 914.967 kb on - strand, within OH686_04400at 914.993 kb on + strand, within OH686_04400at 914.993 kb on + strand, within OH686_04400at 914.993 kb on + strand, within OH686_04400at 914.993 kb on + strand, within OH686_04400at 914.993 kb on + strand, within OH686_04400at 914.993 kb on + strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 914.994 kb on - strand, within OH686_04400at 915.314 kb on + strandat 915.315 kb on - strandat 915.315 kb on - strandat 915.320 kb on + strandat 915.320 kb on + strandat 915.320 kb on + strandat 915.321 kb on - strandat 915.321 kb on - strandat 915.354 kb on + strandat 915.439 kb on + strandat 915.439 kb on + strandat 915.439 kb on + strandat 915.439 kb on + strandat 915.440 kb on - strandat 915.440 kb on - strandat 915.440 kb on - strandat 915.440 kb on - strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.500 kb on + strandat 915.500 kb on + strandat 915.541 kb on + strandat 915.541 kb on + strandat 915.542 kb on - strandat 915.542 kb on - strandat 915.542 kb on - strandat 916.051 kb on + strand, within OH686_04405at 916.066 kb on + strand, within OH686_04405at 916.211 kb on - strandat 916.211 kb on - strandat 916.211 kb on - strandat 916.494 kb on + strand, within OH686_04410at 916.494 kb on + strand, within OH686_04410at 916.494 kb on + strand, within OH686_04410at 916.495 kb on - strand, within OH686_04410at 916.495 kb on - strand, within OH686_04410at 916.495 kb on - strand, within OH686_04410at 916.711 kb on + strand, within OH686_04410at 916.711 kb on + strand, within OH686_04410at 916.711 kb on + strand, within OH686_04410at 916.712 kb on - strand, within OH686_04410at 916.712 kb on - strand, within OH686_04410at 916.818 kb on + strand, within OH686_04410at 916.818 kb on + strand, within OH686_04410at 916.819 kb on - strand, within OH686_04410

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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914,613 - OH686_04400 0.74 -0.1
914,613 - OH686_04400 0.74 -0.3
914,613 - OH686_04400 0.74 +0.6
914,613 - OH686_04400 0.74 +0.6
914,678 + OH686_04400 0.77 -1.2
914,678 + OH686_04400 0.77 -2.3
914,678 + OH686_04400 0.77 -3.8
914,678 + OH686_04400 0.77 -1.6
914,678 + OH686_04400 0.77 -2.9
914,678 + OH686_04400 0.77 -2.2
914,679 - OH686_04400 0.77 -0.7
914,679 - OH686_04400 0.77 +0.3
914,679 - OH686_04400 0.77 +0.4
914,679 - OH686_04400 0.77 -0.4
914,679 - OH686_04400 0.77 -1.4
914,925 + OH686_04400 0.86 -2.0
914,925 + OH686_04400 0.86 -0.0
914,926 - OH686_04400 0.86 +0.2
914,927 + OH686_04400 0.86 -1.1
914,927 + OH686_04400 0.86 -1.0
914,927 + OH686_04400 0.86 -0.0
914,927 + OH686_04400 0.86 -1.5
914,927 + OH686_04400 0.86 +0.4
914,927 + OH686_04400 0.86 -2.6
914,927 + OH686_04400 0.86 -2.8
914,927 + OH686_04400 0.86 -0.8
914,927 + OH686_04400 0.86 -3.8
914,927 + OH686_04400 0.86 -2.5
914,927 + OH686_04400 0.86 -1.9
914,927 + OH686_04400 0.86 -1.6
914,927 + OH686_04400 0.86 -0.5
914,927 + OH686_04400 0.86 -1.6
914,928 - OH686_04400 0.86 +0.5
914,928 - OH686_04400 0.86 -0.4
914,928 - OH686_04400 0.86 +0.6
914,928 - OH686_04400 0.86 +0.5
914,928 - OH686_04400 0.86 -0.0
914,928 - OH686_04400 0.86 -1.0
914,928 - OH686_04400 0.86 -0.2
914,928 - OH686_04400 0.86 +0.2
914,928 - OH686_04400 0.86 +0.5
914,928 - OH686_04400 0.86 -0.8
914,928 - OH686_04400 0.86 +0.1
914,928 - OH686_04400 0.86 -0.1
914,928 - OH686_04400 0.86 -0.5
914,928 - OH686_04400 0.86 -0.0
914,928 - OH686_04400 0.86 -0.4
914,928 - OH686_04400 0.86 -0.3
914,928 - OH686_04400 0.86 -0.2
914,928 - OH686_04400 0.86 +0.3
914,928 - OH686_04400 0.86 -0.4
914,928 - OH686_04400 0.86 -2.0
914,928 - OH686_04400 0.86 -0.4
914,928 - OH686_04400 0.86 +0.2
914,928 - OH686_04400 0.86 +1.7
914,928 - OH686_04400 0.86 -0.9
914,928 - OH686_04400 0.86 +0.1
914,966 + OH686_04400 0.88 +0.4
914,966 + OH686_04400 0.88 -2.3
914,967 - OH686_04400 0.88 -0.1
914,993 + OH686_04400 0.89 -2.7
914,993 + OH686_04400 0.89 -0.8
914,993 + OH686_04400 0.89 -2.4
914,993 + OH686_04400 0.89 -2.0
914,993 + OH686_04400 0.89 -1.3
914,993 + OH686_04400 0.89 -2.6
914,994 - OH686_04400 0.89 -0.3
914,994 - OH686_04400 0.89 -1.3
914,994 - OH686_04400 0.89 +1.5
914,994 - OH686_04400 0.89 -1.2
914,994 - OH686_04400 0.89 -0.1
914,994 - OH686_04400 0.89 +0.5
914,994 - OH686_04400 0.89 +0.4
914,994 - OH686_04400 0.89 +0.3
914,994 - OH686_04400 0.89 -2.0
914,994 - OH686_04400 0.89 -0.5
914,994 - OH686_04400 0.89 +0.5
914,994 - OH686_04400 0.89 +0.3
915,314 + -3.0
915,315 - -1.0
915,315 - -0.4
915,320 + -1.7
915,320 + -1.9
915,320 + -2.5
915,321 - +0.1
915,321 - -0.9
915,354 + -1.3
915,439 + -2.0
915,439 + -0.6
915,439 + -0.9
915,439 + -3.5
915,440 - +1.1
915,440 - -1.2
915,440 - +0.8
915,440 - -1.6
915,468 + -0.4
915,468 + -1.3
915,468 + -1.3
915,468 + -2.0
915,469 - +0.7
915,469 - -0.3
915,469 - -1.4
915,469 - -0.1
915,469 - -0.4
915,469 - +0.6
915,469 - -0.3
915,500 + -1.7
915,500 + -1.6
915,541 + -2.4
915,541 + -0.6
915,542 - -0.5
915,542 - -1.0
915,542 - -0.2
916,051 + OH686_04405 0.75 -2.6
916,066 + OH686_04405 0.77 -1.4
916,211 - +0.5
916,211 - -0.8
916,211 - -2.5
916,494 + OH686_04410 0.14 +0.5
916,494 + OH686_04410 0.14 -0.7
916,494 + OH686_04410 0.14 -2.3
916,495 - OH686_04410 0.14 -0.1
916,495 - OH686_04410 0.14 +0.6
916,495 - OH686_04410 0.14 +0.1
916,711 + OH686_04410 0.25 -1.1
916,711 + OH686_04410 0.25 -0.4
916,711 + OH686_04410 0.25 -1.0
916,712 - OH686_04410 0.25 -1.0
916,712 - OH686_04410 0.25 +1.4
916,818 + OH686_04410 0.31 +1.4
916,818 + OH686_04410 0.31 +0.3
916,819 - OH686_04410 0.31 +0.6

Or see this region's nucleotide sequence