Strain Fitness in Pseudomonas sp. S08-1 around OH686_02430

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02415 and OH686_02420 are separated by 26 nucleotidesOH686_02420 and OH686_02425 are separated by 43 nucleotidesOH686_02425 and OH686_02430 are separated by 16 nucleotidesOH686_02430 and OH686_02435 overlap by 14 nucleotides OH686_02415: OH686_02415 - Glyceraldehyde-3-phosphate dehydrogenase, putative, at 513,852 to 515,477 _02415 OH686_02420: OH686_02420 - hypothetical protein, at 515,504 to 515,668 _02420 OH686_02425: OH686_02425 - 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase , at 515,712 to 516,401 _02425 OH686_02430: OH686_02430 - 6-phosphogluconolactonase , eukaryotic type, at 516,418 to 517,134 _02430 OH686_02435: OH686_02435 - glucose-6-phosphate dehydrogenase, at 517,121 to 518,590 _02435 Position (kb) 516 517 518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 515.583 kb on + strand, within OH686_02420at 515.673 kb on + strandat 515.673 kb on + strandat 515.674 kb on - strandat 515.674 kb on - strandat 515.674 kb on - strandat 515.690 kb on - strandat 515.695 kb on + strandat 515.695 kb on + strandat 515.695 kb on + strandat 515.696 kb on - strandat 515.696 kb on - strandat 515.696 kb on - strandat 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.977 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.035 kb on - strand, within OH686_02425at 516.035 kb on - strand, within OH686_02425at 516.431 kb on + strandat 516.431 kb on + strandat 516.431 kb on + strandat 516.432 kb on - strandat 516.432 kb on - strandat 516.432 kb on - strandat 516.801 kb on - strand, within OH686_02430at 516.801 kb on - strand, within OH686_02430at 517.135 kb on - strandat 517.200 kb on + strandat 517.200 kb on + strandat 517.201 kb on - strandat 517.201 kb on - strandat 517.267 kb on - strandat 517.362 kb on + strand, within OH686_02435at 517.362 kb on + strand, within OH686_02435at 517.362 kb on + strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.453 kb on + strand, within OH686_02435at 517.454 kb on - strand, within OH686_02435at 517.454 kb on - strand, within OH686_02435at 517.454 kb on - strand, within OH686_02435at 517.454 kb on - strand, within OH686_02435at 517.454 kb on - strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.524 kb on + strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.525 kb on - strand, within OH686_02435at 517.596 kb on + strand, within OH686_02435at 517.596 kb on + strand, within OH686_02435at 517.597 kb on - strand, within OH686_02435at 517.597 kb on - strand, within OH686_02435at 517.597 kb on - strand, within OH686_02435at 517.695 kb on + strand, within OH686_02435at 517.734 kb on + strand, within OH686_02435at 517.734 kb on + strand, within OH686_02435at 517.734 kb on + strand, within OH686_02435at 517.735 kb on - strand, within OH686_02435at 517.735 kb on - strand, within OH686_02435at 517.735 kb on - strand, within OH686_02435at 517.735 kb on - strand, within OH686_02435at 517.735 kb on - strand, within OH686_02435at 517.923 kb on + strand, within OH686_02435at 517.924 kb on - strand, within OH686_02435at 518.064 kb on + strand, within OH686_02435at 518.064 kb on + strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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515,583 + OH686_02420 0.48 -1.4
515,673 + -1.7
515,673 + -3.1
515,674 - -0.8
515,674 - -0.1
515,674 - -1.1
515,690 - +0.2
515,695 + -3.5
515,695 + -2.9
515,695 + -3.5
515,696 - -1.9
515,696 - -0.8
515,696 - -1.1
515,836 + OH686_02425 0.18 -3.0
515,836 + OH686_02425 0.18 -4.6
515,836 + OH686_02425 0.18 -3.2
515,836 + OH686_02425 0.18 -4.2
515,836 + OH686_02425 0.18 -2.3
515,836 + OH686_02425 0.18 -3.2
515,836 + OH686_02425 0.18 -3.6
515,836 + OH686_02425 0.18 -2.8
515,836 + OH686_02425 0.18 -4.2
515,836 + OH686_02425 0.18 -3.4
515,836 + OH686_02425 0.18 -3.7
515,836 + OH686_02425 0.18 -3.5
515,836 + OH686_02425 0.18 -2.6
515,836 + OH686_02425 0.18 -3.0
515,836 + OH686_02425 0.18 -2.2
515,836 + OH686_02425 0.18 -4.3
515,836 + OH686_02425 0.18 -2.2
515,837 - OH686_02425 0.18 -3.0
515,837 - OH686_02425 0.18 -4.7
515,837 - OH686_02425 0.18 -3.4
515,837 - OH686_02425 0.18 -0.7
515,837 - OH686_02425 0.18 -1.5
515,837 - OH686_02425 0.18 -1.1
515,837 - OH686_02425 0.18 -3.7
515,837 - OH686_02425 0.18 -3.0
515,837 - OH686_02425 0.18 -3.4
515,837 - OH686_02425 0.18 -2.4
515,837 - OH686_02425 0.18 -3.2
515,837 - OH686_02425 0.18 -4.0
515,837 - OH686_02425 0.18 -3.7
515,837 - OH686_02425 0.18 -2.0
515,837 - OH686_02425 0.18 -3.4
515,837 - OH686_02425 0.18 -4.0
515,837 - OH686_02425 0.18 -2.4
515,977 + OH686_02425 0.38 -3.2
516,034 + OH686_02425 0.47 -4.4
516,034 + OH686_02425 0.47 -2.5
516,034 + OH686_02425 0.47 -3.1
516,035 - OH686_02425 0.47 -3.4
516,035 - OH686_02425 0.47 -4.1
516,431 + -3.7
516,431 + -3.2
516,431 + -2.7
516,432 - -2.9
516,432 - -1.4
516,432 - -2.7
516,801 - OH686_02430 0.53 -2.9
516,801 - OH686_02430 0.53 -3.3
517,135 - -1.7
517,200 + -3.2
517,200 + -3.6
517,201 - -2.0
517,201 - -2.2
517,267 - -1.8
517,362 + OH686_02435 0.16 -1.9
517,362 + OH686_02435 0.16 -0.7
517,362 + OH686_02435 0.16 -3.7
517,363 - OH686_02435 0.16 -3.9
517,363 - OH686_02435 0.16 -1.5
517,363 - OH686_02435 0.16 -0.7
517,363 - OH686_02435 0.16 -2.2
517,363 - OH686_02435 0.16 -1.9
517,453 + OH686_02435 0.23 -3.4
517,453 + OH686_02435 0.23 -1.5
517,453 + OH686_02435 0.23 -1.9
517,453 + OH686_02435 0.23 -3.8
517,453 + OH686_02435 0.23 -2.2
517,453 + OH686_02435 0.23 -2.3
517,453 + OH686_02435 0.23 -2.1
517,453 + OH686_02435 0.23 -4.4
517,454 - OH686_02435 0.23 -3.0
517,454 - OH686_02435 0.23 -0.1
517,454 - OH686_02435 0.23 -2.2
517,454 - OH686_02435 0.23 -1.8
517,454 - OH686_02435 0.23 -2.2
517,524 + OH686_02435 0.27 -2.9
517,524 + OH686_02435 0.27 -3.1
517,524 + OH686_02435 0.27 -4.3
517,524 + OH686_02435 0.27 -4.5
517,524 + OH686_02435 0.27 -3.2
517,524 + OH686_02435 0.27 -3.7
517,524 + OH686_02435 0.27 -1.0
517,525 - OH686_02435 0.27 -1.8
517,525 - OH686_02435 0.27 -2.3
517,525 - OH686_02435 0.27 -4.2
517,525 - OH686_02435 0.27 -1.7
517,525 - OH686_02435 0.27 -4.3
517,525 - OH686_02435 0.27 -0.7
517,525 - OH686_02435 0.27 -3.3
517,525 - OH686_02435 0.27 -0.3
517,596 + OH686_02435 0.32 -4.0
517,596 + OH686_02435 0.32 -4.6
517,597 - OH686_02435 0.32 -2.1
517,597 - OH686_02435 0.32 -2.0
517,597 - OH686_02435 0.32 -2.5
517,695 + OH686_02435 0.39 -1.9
517,734 + OH686_02435 0.42 -4.5
517,734 + OH686_02435 0.42 -1.4
517,734 + OH686_02435 0.42 -4.6
517,735 - OH686_02435 0.42 -3.9
517,735 - OH686_02435 0.42 -3.2
517,735 - OH686_02435 0.42 -4.0
517,735 - OH686_02435 0.42 -2.2
517,735 - OH686_02435 0.42 -0.7
517,923 + OH686_02435 0.55 -2.4
517,924 - OH686_02435 0.55 -3.1
518,064 + OH686_02435 0.64 -3.0
518,064 + OH686_02435 0.64 -1.9
518,065 - OH686_02435 0.64 -2.3
518,065 - OH686_02435 0.64 -3.2
518,065 - OH686_02435 0.64 -1.9
518,065 - OH686_02435 0.64 -3.1
518,079 + OH686_02435 0.65 -1.8
518,079 + OH686_02435 0.65 -2.5
518,079 + OH686_02435 0.65 -2.0
518,079 + OH686_02435 0.65 -2.2
518,080 - OH686_02435 0.65 -2.3
518,080 - OH686_02435 0.65 -1.1
518,080 - OH686_02435 0.65 -1.7
518,080 - OH686_02435 0.65 +0.6
518,080 - OH686_02435 0.65 -2.9

Or see this region's nucleotide sequence