Strain Fitness in Pseudomonas sp. S08-1 around OH686_02210

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02205 and OH686_02210 are separated by 133 nucleotidesOH686_02210 and OH686_02215 are separated by 14 nucleotidesOH686_02215 and OH686_02220 are separated by 13 nucleotides OH686_02205: OH686_02205 - cytochrome c oxidase, cbb3-type, subunit III, at 473,180 to 474,157 _02205 OH686_02210: OH686_02210 - cytochrome c oxidase accessory protein CcoG, at 474,291 to 475,706 _02210 OH686_02215: OH686_02215 - Putative analog of CcoH, COG3198, at 475,721 to 476,224 _02215 OH686_02220: OH686_02220 - cadmium-translocating P-type ATPase, at 476,238 to 478,643 _02220 Position (kb) 474 475 476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 473.544 kb on - strand, within OH686_02205at 473.678 kb on + strand, within OH686_02205at 473.825 kb on + strand, within OH686_02205at 473.993 kb on + strand, within OH686_02205at 473.993 kb on + strand, within OH686_02205at 473.993 kb on + strand, within OH686_02205at 473.994 kb on - strand, within OH686_02205at 474.005 kb on + strand, within OH686_02205at 474.068 kb on + strandat 474.069 kb on - strandat 474.114 kb on - strandat 474.114 kb on - strandat 474.141 kb on + strandat 474.141 kb on + strandat 474.141 kb on + strandat 474.141 kb on + strandat 474.142 kb on - strandat 474.142 kb on - strandat 474.155 kb on + strandat 474.155 kb on + strandat 474.155 kb on + strandat 474.155 kb on + strandat 474.155 kb on + strandat 474.155 kb on + strandat 474.155 kb on + strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.156 kb on - strandat 474.215 kb on + strandat 474.215 kb on + strandat 474.215 kb on + strandat 474.220 kb on + strandat 474.220 kb on + strandat 474.220 kb on + strandat 474.220 kb on + strandat 474.221 kb on - strandat 474.221 kb on - strandat 474.221 kb on - strandat 474.221 kb on - strandat 474.252 kb on + strandat 474.252 kb on + strandat 474.252 kb on + strandat 474.252 kb on + strandat 474.252 kb on + strandat 474.253 kb on - strandat 474.253 kb on - strandat 474.253 kb on - strandat 474.281 kb on + strandat 474.360 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.381 kb on + strandat 474.382 kb on - strandat 474.382 kb on - strandat 474.383 kb on + strandat 474.450 kb on + strand, within OH686_02210at 474.450 kb on + strand, within OH686_02210at 474.450 kb on + strand, within OH686_02210at 474.450 kb on + strand, within OH686_02210at 474.450 kb on + strand, within OH686_02210at 474.450 kb on + strand, within OH686_02210at 474.450 kb on + strand, within OH686_02210at 474.451 kb on - strand, within OH686_02210at 474.451 kb on - strand, within OH686_02210at 474.451 kb on - strand, within OH686_02210at 474.639 kb on + strand, within OH686_02210at 474.639 kb on + strand, within OH686_02210at 474.639 kb on + strand, within OH686_02210at 474.639 kb on + strand, within OH686_02210at 474.640 kb on - strand, within OH686_02210at 474.707 kb on + strand, within OH686_02210at 474.708 kb on - strand, within OH686_02210at 474.820 kb on + strand, within OH686_02210at 474.820 kb on + strand, within OH686_02210at 474.820 kb on + strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.825 kb on + strand, within OH686_02210at 474.825 kb on + strand, within OH686_02210at 474.825 kb on + strand, within OH686_02210at 474.826 kb on - strand, within OH686_02210at 474.888 kb on + strand, within OH686_02210at 474.888 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.972 kb on + strand, within OH686_02210at 474.972 kb on + strand, within OH686_02210at 475.023 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.075 kb on - strand, within OH686_02210at 475.075 kb on - strand, within OH686_02210at 475.075 kb on - strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.249 kb on - strand, within OH686_02210at 475.249 kb on - strand, within OH686_02210at 475.268 kb on - strand, within OH686_02210at 475.306 kb on + strand, within OH686_02210at 475.307 kb on - strand, within OH686_02210at 475.311 kb on + strand, within OH686_02210at 475.311 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.444 kb on - strand, within OH686_02210at 475.444 kb on - strand, within OH686_02210at 475.444 kb on - strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.522 kb on - strand, within OH686_02210at 475.522 kb on - strand, within OH686_02210at 475.754 kb on + strandat 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.869 kb on - strand, within OH686_02215at 475.869 kb on - strand, within OH686_02215at 476.090 kb on + strand, within OH686_02215at 476.090 kb on + strand, within OH686_02215at 476.090 kb on + strand, within OH686_02215at 476.091 kb on - strand, within OH686_02215at 476.091 kb on - strand, within OH686_02215at 476.388 kb on + strandat 476.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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473,544 - OH686_02205 0.37 -0.4
473,678 + OH686_02205 0.51 -0.4
473,825 + OH686_02205 0.66 -0.4
473,993 + OH686_02205 0.83 +0.6
473,993 + OH686_02205 0.83 -1.4
473,993 + OH686_02205 0.83 -0.6
473,994 - OH686_02205 0.83 -0.1
474,005 + OH686_02205 0.84 -0.1
474,068 + +0.6
474,069 - -0.1
474,114 - -0.1
474,114 - -0.4
474,141 + -0.9
474,141 + -2.7
474,141 + -0.8
474,141 + -2.1
474,142 - -1.9
474,142 - +0.1
474,155 + +0.5
474,155 + +0.3
474,155 + -1.7
474,155 + -0.1
474,155 + +0.8
474,155 + +0.5
474,155 + -0.3
474,156 - +1.9
474,156 - -1.2
474,156 - -1.1
474,156 - -1.2
474,156 - -0.5
474,156 - -0.5
474,156 - -0.1
474,156 - -1.4
474,156 - -1.1
474,215 + -0.1
474,215 + -1.9
474,215 + +0.1
474,220 + +0.2
474,220 + -0.0
474,220 + -0.1
474,220 + -0.6
474,221 - -0.5
474,221 - -0.6
474,221 - +0.6
474,221 - -0.3
474,252 + +0.0
474,252 + -0.1
474,252 + +1.4
474,252 + +1.0
474,252 + +0.6
474,253 - -0.6
474,253 - -1.1
474,253 - -0.4
474,281 + +1.2
474,360 + +0.5
474,381 + -0.6
474,381 + -1.7
474,381 + +0.4
474,381 + -2.2
474,381 + -1.9
474,381 + -2.0
474,381 + -0.2
474,381 + -1.0
474,382 - -0.1
474,382 - -0.9
474,383 + -2.2
474,450 + OH686_02210 0.11 -1.6
474,450 + OH686_02210 0.11 -1.1
474,450 + OH686_02210 0.11 -1.0
474,450 + OH686_02210 0.11 -0.9
474,450 + OH686_02210 0.11 -1.2
474,450 + OH686_02210 0.11 -0.8
474,450 + OH686_02210 0.11 -0.1
474,451 - OH686_02210 0.11 -1.1
474,451 - OH686_02210 0.11 -1.2
474,451 - OH686_02210 0.11 -1.6
474,639 + OH686_02210 0.25 -2.5
474,639 + OH686_02210 0.25 -1.6
474,639 + OH686_02210 0.25 -0.5
474,639 + OH686_02210 0.25 -0.9
474,640 - OH686_02210 0.25 -1.4
474,707 + OH686_02210 0.29 -0.1
474,708 - OH686_02210 0.29 -2.3
474,820 + OH686_02210 0.37 -1.2
474,820 + OH686_02210 0.37 -1.0
474,820 + OH686_02210 0.37 -0.6
474,821 - OH686_02210 0.37 -1.1
474,821 - OH686_02210 0.37 -0.9
474,821 - OH686_02210 0.37 -1.2
474,821 - OH686_02210 0.37 -0.9
474,825 + OH686_02210 0.38 -1.4
474,825 + OH686_02210 0.38 -2.6
474,825 + OH686_02210 0.38 -2.4
474,826 - OH686_02210 0.38 -0.9
474,888 + OH686_02210 0.42 -3.3
474,888 + OH686_02210 0.42 -1.4
474,960 + OH686_02210 0.47 -1.9
474,960 + OH686_02210 0.47 -0.8
474,960 + OH686_02210 0.47 -1.3
474,960 + OH686_02210 0.47 -3.5
474,960 + OH686_02210 0.47 -1.6
474,960 + OH686_02210 0.47 -2.6
474,960 + OH686_02210 0.47 -0.8
474,960 + OH686_02210 0.47 -1.4
474,960 + OH686_02210 0.47 -1.8
474,960 + OH686_02210 0.47 -1.8
474,960 + OH686_02210 0.47 -3.1
474,960 + OH686_02210 0.47 -1.2
474,960 + OH686_02210 0.47 -1.9
474,960 + OH686_02210 0.47 -1.0
474,960 + OH686_02210 0.47 -0.9
474,960 + OH686_02210 0.47 -2.1
474,960 + OH686_02210 0.47 -2.5
474,960 + OH686_02210 0.47 -0.1
474,960 + OH686_02210 0.47 -1.2
474,960 + OH686_02210 0.47 -0.5
474,960 + OH686_02210 0.47 -1.4
474,960 + OH686_02210 0.47 -2.4
474,960 + OH686_02210 0.47 -0.3
474,960 + OH686_02210 0.47 -1.3
474,960 + OH686_02210 0.47 -1.8
474,960 + OH686_02210 0.47 -1.0
474,961 - OH686_02210 0.47 -0.6
474,961 - OH686_02210 0.47 -0.1
474,961 - OH686_02210 0.47 -0.6
474,961 - OH686_02210 0.47 -1.5
474,961 - OH686_02210 0.47 -0.6
474,961 - OH686_02210 0.47 -2.2
474,961 - OH686_02210 0.47 -0.9
474,961 - OH686_02210 0.47 -2.7
474,961 - OH686_02210 0.47 -1.8
474,961 - OH686_02210 0.47 -0.9
474,961 - OH686_02210 0.47 -1.6
474,961 - OH686_02210 0.47 -0.6
474,961 - OH686_02210 0.47 -1.1
474,961 - OH686_02210 0.47 -1.5
474,962 + OH686_02210 0.47 -1.8
474,962 + OH686_02210 0.47 -2.5
474,962 + OH686_02210 0.47 -0.5
474,962 + OH686_02210 0.47 -0.9
474,962 + OH686_02210 0.47 -0.5
474,962 + OH686_02210 0.47 -2.1
474,962 + OH686_02210 0.47 -2.3
474,962 + OH686_02210 0.47 -2.2
474,962 + OH686_02210 0.47 -1.9
474,962 + OH686_02210 0.47 -2.0
474,962 + OH686_02210 0.47 -1.8
474,962 + OH686_02210 0.47 -2.2
474,962 + OH686_02210 0.47 -1.2
474,962 + OH686_02210 0.47 -1.2
474,962 + OH686_02210 0.47 -0.6
474,962 + OH686_02210 0.47 -2.4
474,962 + OH686_02210 0.47 -2.5
474,962 + OH686_02210 0.47 -1.5
474,963 - OH686_02210 0.47 -0.1
474,963 - OH686_02210 0.47 -1.9
474,963 - OH686_02210 0.47 -1.5
474,963 - OH686_02210 0.47 -1.1
474,963 - OH686_02210 0.47 -3.0
474,963 - OH686_02210 0.47 -1.4
474,963 - OH686_02210 0.47 -2.1
474,963 - OH686_02210 0.47 -0.4
474,963 - OH686_02210 0.47 -1.8
474,963 - OH686_02210 0.47 -0.6
474,972 + OH686_02210 0.48 -0.8
474,972 + OH686_02210 0.48 -1.5
475,023 + OH686_02210 0.52 -0.2
475,074 + OH686_02210 0.55 -1.8
475,074 + OH686_02210 0.55 -0.8
475,074 + OH686_02210 0.55 -1.3
475,074 + OH686_02210 0.55 -1.2
475,075 - OH686_02210 0.55 -0.9
475,075 - OH686_02210 0.55 -0.6
475,075 - OH686_02210 0.55 -1.4
475,248 + OH686_02210 0.68 -1.6
475,248 + OH686_02210 0.68 -2.9
475,248 + OH686_02210 0.68 -0.6
475,248 + OH686_02210 0.68 -2.6
475,248 + OH686_02210 0.68 -1.3
475,248 + OH686_02210 0.68 -1.0
475,249 - OH686_02210 0.68 -2.4
475,249 - OH686_02210 0.68 -0.4
475,268 - OH686_02210 0.69 -0.6
475,306 + OH686_02210 0.72 -2.2
475,307 - OH686_02210 0.72 -0.6
475,311 + OH686_02210 0.72 -0.4
475,311 + OH686_02210 0.72 -1.5
475,443 + OH686_02210 0.81 -1.6
475,443 + OH686_02210 0.81 -3.9
475,443 + OH686_02210 0.81 +0.5
475,443 + OH686_02210 0.81 -3.6
475,443 + OH686_02210 0.81 -1.4
475,443 + OH686_02210 0.81 -1.0
475,444 - OH686_02210 0.81 -1.9
475,444 - OH686_02210 0.81 -2.5
475,444 - OH686_02210 0.81 -0.9
475,485 + OH686_02210 0.84 -1.4
475,485 + OH686_02210 0.84 -1.2
475,485 + OH686_02210 0.84 -0.1
475,485 + OH686_02210 0.84 -1.5
475,485 + OH686_02210 0.84 -1.1
475,485 + OH686_02210 0.84 -2.3
475,485 + OH686_02210 0.84 -1.0
475,486 - OH686_02210 0.84 -2.0
475,486 - OH686_02210 0.84 -2.5
475,486 - OH686_02210 0.84 -3.5
475,486 - OH686_02210 0.84 -2.2
475,486 - OH686_02210 0.84 -0.6
475,486 - OH686_02210 0.84 -0.9
475,486 - OH686_02210 0.84 -0.7
475,486 - OH686_02210 0.84 +0.4
475,521 + OH686_02210 0.87 -1.8
475,521 + OH686_02210 0.87 -0.9
475,521 + OH686_02210 0.87 -2.0
475,521 + OH686_02210 0.87 -1.4
475,521 + OH686_02210 0.87 +0.9
475,521 + OH686_02210 0.87 -2.0
475,522 - OH686_02210 0.87 -1.6
475,522 - OH686_02210 0.87 -2.4
475,754 + -2.3
475,868 + OH686_02215 0.29 -0.9
475,868 + OH686_02215 0.29 -0.6
475,868 + OH686_02215 0.29 -1.2
475,868 + OH686_02215 0.29 -1.2
475,868 + OH686_02215 0.29 -0.1
475,869 - OH686_02215 0.29 -0.4
475,869 - OH686_02215 0.29 -0.4
476,090 + OH686_02215 0.73 -0.1
476,090 + OH686_02215 0.73 -1.2
476,090 + OH686_02215 0.73 -0.1
476,091 - OH686_02215 0.73 -1.1
476,091 - OH686_02215 0.73 -0.1
476,388 + -0.4
476,463 + -0.1

Or see this region's nucleotide sequence