Strain Fitness in Pseudomonas sp. S08-1 around OH686_01690

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_01685 and OH686_01690 are separated by 71 nucleotidesOH686_01690 and OH686_01695 overlap by 4 nucleotides OH686_01685: OH686_01685 - 2-methylcitrate synthase , at 364,890 to 366,053 _01685 OH686_01690: OH686_01690 - methylisocitrate lyase, at 366,125 to 367,012 _01690 OH686_01695: OH686_01695 - Propionate catabolism operon transcriptional regulator of GntR family, at 367,009 to 367,731 _01695 Position (kb) 366 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.314 kb on + strand, within OH686_01685at 365.315 kb on - strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.615 kb on - strand, within OH686_01685at 365.822 kb on + strand, within OH686_01685at 365.822 kb on + strand, within OH686_01685at 365.822 kb on + strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.824 kb on + strand, within OH686_01685at 365.824 kb on + strand, within OH686_01685at 365.825 kb on - strand, within OH686_01685at 365.825 kb on - strand, within OH686_01685at 365.825 kb on - strand, within OH686_01685at 365.920 kb on + strand, within OH686_01685at 365.921 kb on - strand, within OH686_01685at 365.929 kb on + strand, within OH686_01685at 365.929 kb on + strand, within OH686_01685at 365.929 kb on + strand, within OH686_01685at 365.930 kb on - strand, within OH686_01685at 366.040 kb on - strandat 366.040 kb on - strandat 366.040 kb on - strandat 366.081 kb on + strandat 366.081 kb on + strandat 366.081 kb on + strandat 366.081 kb on + strandat 366.082 kb on - strandat 366.082 kb on - strandat 366.088 kb on + strandat 366.088 kb on + strandat 366.088 kb on + strandat 366.088 kb on + strandat 366.088 kb on + strandat 366.089 kb on - strandat 366.089 kb on - strandat 366.089 kb on - strandat 366.089 kb on - strandat 366.089 kb on - strandat 366.089 kb on - strandat 366.192 kb on + strandat 366.192 kb on + strandat 366.261 kb on + strand, within OH686_01690at 366.261 kb on + strand, within OH686_01690at 366.261 kb on + strand, within OH686_01690at 366.261 kb on + strand, within OH686_01690at 366.262 kb on - strand, within OH686_01690at 366.262 kb on - strand, within OH686_01690at 366.262 kb on - strand, within OH686_01690at 366.309 kb on + strand, within OH686_01690at 366.309 kb on + strand, within OH686_01690at 366.310 kb on - strand, within OH686_01690at 366.426 kb on + strand, within OH686_01690at 366.426 kb on + strand, within OH686_01690at 366.426 kb on + strand, within OH686_01690at 366.426 kb on + strand, within OH686_01690at 366.426 kb on + strand, within OH686_01690at 366.427 kb on - strand, within OH686_01690at 366.427 kb on - strand, within OH686_01690at 366.427 kb on - strand, within OH686_01690at 366.427 kb on - strand, within OH686_01690at 366.427 kb on - strand, within OH686_01690at 366.427 kb on - strand, within OH686_01690at 366.441 kb on + strand, within OH686_01690at 366.441 kb on + strand, within OH686_01690at 366.484 kb on - strand, within OH686_01690at 366.484 kb on - strand, within OH686_01690at 366.800 kb on + strand, within OH686_01690at 366.800 kb on + strand, within OH686_01690at 366.800 kb on + strand, within OH686_01690at 366.801 kb on - strand, within OH686_01690at 366.801 kb on - strand, within OH686_01690at 366.801 kb on - strand, within OH686_01690at 366.832 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.885 kb on + strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 366.886 kb on - strand, within OH686_01690at 367.056 kb on - strandat 367.069 kb on - strandat 367.211 kb on + strand, within OH686_01695at 367.211 kb on + strand, within OH686_01695at 367.211 kb on + strand, within OH686_01695at 367.211 kb on + strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.229 kb on + strand, within OH686_01695at 367.229 kb on + strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.322 kb on + strand, within OH686_01695at 367.323 kb on - strand, within OH686_01695at 367.323 kb on - strand, within OH686_01695at 367.458 kb on - strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.514 kb on - strand, within OH686_01695at 367.514 kb on - strand, within OH686_01695at 367.514 kb on - strand, within OH686_01695at 367.583 kb on + strand, within OH686_01695at 367.583 kb on + strand, within OH686_01695at 367.583 kb on + strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.732 kb on + strandat 367.784 kb on + strandat 367.784 kb on + strandat 367.874 kb on + strandat 367.874 kb on + strandat 367.875 kb on - strandat 367.906 kb on + strandat 367.906 kb on + strandat 367.907 kb on - strandat 367.907 kb on - strandat 367.907 kb on - strandat 367.907 kb on - strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.944 kb on - strandat 367.944 kb on - strandat 367.952 kb on + strandat 367.953 kb on - strandat 367.953 kb on - strandat 367.953 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
365,230 + OH686_01685 0.29 +0.3
365,230 + OH686_01685 0.29 -0.1
365,230 + OH686_01685 0.29 +0.3
365,230 + OH686_01685 0.29 +2.8
365,230 + OH686_01685 0.29 -0.5
365,231 - OH686_01685 0.29 -0.3
365,231 - OH686_01685 0.29 -2.5
365,231 - OH686_01685 0.29 +1.0
365,231 - OH686_01685 0.29 -0.1
365,231 - OH686_01685 0.29 -2.0
365,314 + OH686_01685 0.36 -0.0
365,315 - OH686_01685 0.37 +0.7
365,401 + OH686_01685 0.44 -0.0
365,401 + OH686_01685 0.44 -2.7
365,401 + OH686_01685 0.44 +0.9
365,401 + OH686_01685 0.44 +0.1
365,401 + OH686_01685 0.44 +0.1
365,401 + OH686_01685 0.44 +0.9
365,401 + OH686_01685 0.44 -0.8
365,401 + OH686_01685 0.44 -0.4
365,401 + OH686_01685 0.44 -0.0
365,401 + OH686_01685 0.44 -0.5
365,401 + OH686_01685 0.44 -1.0
365,401 + OH686_01685 0.44 +0.8
365,401 + OH686_01685 0.44 +1.4
365,401 + OH686_01685 0.44 -0.0
365,401 + OH686_01685 0.44 -1.0
365,401 + OH686_01685 0.44 -0.3
365,401 + OH686_01685 0.44 +0.7
365,401 + OH686_01685 0.44 +0.1
365,401 + OH686_01685 0.44 -0.3
365,401 + OH686_01685 0.44 -1.3
365,401 + OH686_01685 0.44 +0.9
365,401 + OH686_01685 0.44 +0.2
365,401 + OH686_01685 0.44 +0.2
365,401 + OH686_01685 0.44 -1.0
365,402 - OH686_01685 0.44 +0.6
365,402 - OH686_01685 0.44 +0.8
365,402 - OH686_01685 0.44 +1.9
365,402 - OH686_01685 0.44 +0.8
365,402 - OH686_01685 0.44 -0.4
365,402 - OH686_01685 0.44 -0.5
365,402 - OH686_01685 0.44 -0.8
365,402 - OH686_01685 0.44 +1.6
365,402 - OH686_01685 0.44 +0.1
365,402 - OH686_01685 0.44 -0.2
365,402 - OH686_01685 0.44 -0.0
365,402 - OH686_01685 0.44 +0.2
365,402 - OH686_01685 0.44 -0.1
365,402 - OH686_01685 0.44 -0.1
365,402 - OH686_01685 0.44 -0.4
365,402 - OH686_01685 0.44 -2.3
365,614 + OH686_01685 0.62 +0.1
365,614 + OH686_01685 0.62 -0.1
365,614 + OH686_01685 0.62 -0.6
365,614 + OH686_01685 0.62 +0.3
365,614 + OH686_01685 0.62 +0.0
365,614 + OH686_01685 0.62 +0.3
365,614 + OH686_01685 0.62 -1.5
365,615 - OH686_01685 0.62 +0.1
365,822 + OH686_01685 0.80 +0.4
365,822 + OH686_01685 0.80 +0.8
365,822 + OH686_01685 0.80 -0.1
365,823 - OH686_01685 0.80 +0.2
365,823 - OH686_01685 0.80 -0.2
365,823 - OH686_01685 0.80 -0.3
365,823 - OH686_01685 0.80 +0.3
365,823 - OH686_01685 0.80 -0.2
365,823 - OH686_01685 0.80 -1.4
365,823 - OH686_01685 0.80 -0.2
365,823 - OH686_01685 0.80 -0.2
365,824 + OH686_01685 0.80 +0.6
365,824 + OH686_01685 0.80 -0.7
365,825 - OH686_01685 0.80 -0.8
365,825 - OH686_01685 0.80 +0.3
365,825 - OH686_01685 0.80 +0.6
365,920 + OH686_01685 0.88 -0.1
365,921 - OH686_01685 0.89 -0.2
365,929 + OH686_01685 0.89 +0.2
365,929 + OH686_01685 0.89 -0.3
365,929 + OH686_01685 0.89 -0.4
365,930 - OH686_01685 0.89 -0.0
366,040 - +1.8
366,040 - -0.3
366,040 - +0.7
366,081 + +0.2
366,081 + +0.2
366,081 + +0.4
366,081 + +0.9
366,082 - +0.3
366,082 - -0.5
366,088 + +1.0
366,088 + +0.5
366,088 + +0.1
366,088 + +0.6
366,088 + -0.2
366,089 - -0.3
366,089 - +0.5
366,089 - -1.2
366,089 - -0.5
366,089 - -0.8
366,089 - -1.4
366,192 + -1.8
366,192 + -2.5
366,261 + OH686_01690 0.15 -1.9
366,261 + OH686_01690 0.15 -2.7
366,261 + OH686_01690 0.15 -0.7
366,261 + OH686_01690 0.15 +0.2
366,262 - OH686_01690 0.15 -1.1
366,262 - OH686_01690 0.15 -1.6
366,262 - OH686_01690 0.15 -2.0
366,309 + OH686_01690 0.21 -1.2
366,309 + OH686_01690 0.21 +0.4
366,310 - OH686_01690 0.21 -0.9
366,426 + OH686_01690 0.34 -1.0
366,426 + OH686_01690 0.34 -2.6
366,426 + OH686_01690 0.34 -3.1
366,426 + OH686_01690 0.34 -1.4
366,426 + OH686_01690 0.34 -1.0
366,427 - OH686_01690 0.34 -1.5
366,427 - OH686_01690 0.34 -2.1
366,427 - OH686_01690 0.34 -2.3
366,427 - OH686_01690 0.34 -0.7
366,427 - OH686_01690 0.34 -2.9
366,427 - OH686_01690 0.34 -1.3
366,441 + OH686_01690 0.36 -0.0
366,441 + OH686_01690 0.36 -1.9
366,484 - OH686_01690 0.40 -3.7
366,484 - OH686_01690 0.40 -2.2
366,800 + OH686_01690 0.76 -2.8
366,800 + OH686_01690 0.76 -1.2
366,800 + OH686_01690 0.76 -1.9
366,801 - OH686_01690 0.76 -2.1
366,801 - OH686_01690 0.76 -2.7
366,801 - OH686_01690 0.76 -2.3
366,832 + OH686_01690 0.80 -0.5
366,885 + OH686_01690 0.86 -1.6
366,885 + OH686_01690 0.86 -1.8
366,885 + OH686_01690 0.86 -2.4
366,885 + OH686_01690 0.86 -1.8
366,885 + OH686_01690 0.86 -0.5
366,885 + OH686_01690 0.86 -1.1
366,885 + OH686_01690 0.86 -0.1
366,885 + OH686_01690 0.86 -1.6
366,885 + OH686_01690 0.86 -0.3
366,885 + OH686_01690 0.86 -1.0
366,885 + OH686_01690 0.86 -1.8
366,885 + OH686_01690 0.86 -1.5
366,885 + OH686_01690 0.86 +0.1
366,886 - OH686_01690 0.86 -2.5
366,886 - OH686_01690 0.86 -0.2
366,886 - OH686_01690 0.86 -2.7
366,886 - OH686_01690 0.86 -2.8
366,886 - OH686_01690 0.86 -2.1
366,886 - OH686_01690 0.86 -0.7
366,886 - OH686_01690 0.86 -1.9
366,886 - OH686_01690 0.86 -1.0
366,886 - OH686_01690 0.86 -1.3
366,886 - OH686_01690 0.86 -1.6
366,886 - OH686_01690 0.86 -0.0
367,056 - +0.0
367,069 - +0.4
367,211 + OH686_01695 0.28 -0.4
367,211 + OH686_01695 0.28 -0.3
367,211 + OH686_01695 0.28 +0.9
367,211 + OH686_01695 0.28 -0.4
367,212 - OH686_01695 0.28 -0.3
367,212 - OH686_01695 0.28 +0.4
367,212 - OH686_01695 0.28 -0.8
367,212 - OH686_01695 0.28 -0.8
367,212 - OH686_01695 0.28 -0.6
367,212 - OH686_01695 0.28 -0.7
367,212 - OH686_01695 0.28 -1.5
367,229 + OH686_01695 0.30 -0.8
367,229 + OH686_01695 0.30 -1.0
367,230 - OH686_01695 0.31 -1.3
367,230 - OH686_01695 0.31 -1.3
367,230 - OH686_01695 0.31 -2.2
367,230 - OH686_01695 0.31 -0.4
367,230 - OH686_01695 0.31 -0.6
367,319 + OH686_01695 0.43 +0.8
367,319 + OH686_01695 0.43 -0.1
367,319 + OH686_01695 0.43 -0.4
367,319 + OH686_01695 0.43 +0.2
367,320 - OH686_01695 0.43 -0.3
367,320 - OH686_01695 0.43 -0.6
367,320 - OH686_01695 0.43 +0.4
367,320 - OH686_01695 0.43 -0.6
367,322 + OH686_01695 0.43 +0.0
367,323 - OH686_01695 0.43 +0.9
367,323 - OH686_01695 0.43 +0.4
367,458 - OH686_01695 0.62 -2.3
367,513 + OH686_01695 0.70 +0.8
367,513 + OH686_01695 0.70 +0.1
367,513 + OH686_01695 0.70 +0.3
367,513 + OH686_01695 0.70 -0.3
367,514 - OH686_01695 0.70 -0.3
367,514 - OH686_01695 0.70 +1.2
367,514 - OH686_01695 0.70 -0.6
367,583 + OH686_01695 0.79 -0.7
367,583 + OH686_01695 0.79 -0.6
367,583 + OH686_01695 0.79 +0.3
367,584 - OH686_01695 0.80 -0.6
367,584 - OH686_01695 0.80 -0.6
367,584 - OH686_01695 0.80 -0.4
367,584 - OH686_01695 0.80 -0.0
367,584 - OH686_01695 0.80 -1.0
367,732 + -1.3
367,784 + -0.2
367,784 + -1.1
367,874 + -0.7
367,874 + -0.5
367,875 - -0.5
367,906 + +0.6
367,906 + +0.3
367,907 - -0.2
367,907 - +0.7
367,907 - -0.5
367,907 - +0.1
367,943 + +0.2
367,943 + +0.6
367,943 + -0.3
367,943 + +0.0
367,943 + -0.8
367,944 - +1.2
367,944 - -0.0
367,952 + -1.0
367,953 - +1.0
367,953 - +0.5
367,953 - -0.4

Or see this region's nucleotide sequence