Strain Fitness in Serratia liquefaciens MT49 around IAI46_25265

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_25255 and IAI46_25260 are separated by 2 nucleotidesIAI46_25260 and IAI46_25265 overlap by 37 nucleotidesIAI46_25265 and IAI46_25270 are separated by 18 nucleotides IAI46_25255: IAI46_25255 - membrane protein insertase YidC, at 5,392,484 to 5,394,121 _25255 IAI46_25260: IAI46_25260 - membrane protein insertion efficiency factor YidD, at 5,394,124 to 5,394,381 _25260 IAI46_25265: IAI46_25265 - ribonuclease P protein component, at 5,394,345 to 5,394,704 _25265 IAI46_25270: IAI46_25270 - 50S ribosomal protein L34, at 5,394,723 to 5,394,863 _25270 Position (kb) 5394 5395Strain fitness (log2 ratio) -1 0 1at 5394.229 kb on + strand, within IAI46_25260at 5394.230 kb on - strand, within IAI46_25260at 5394.230 kb on - strand, within IAI46_25260at 5394.230 kb on - strand, within IAI46_25260at 5394.248 kb on - strand, within IAI46_25260at 5394.248 kb on - strand, within IAI46_25260at 5395.097 kb on + strandat 5395.109 kb on + strandat 5395.110 kb on - strandat 5395.117 kb on + strandat 5395.131 kb on + strandat 5395.132 kb on - strandat 5395.210 kb on + strandat 5395.210 kb on + strandat 5395.210 kb on + strandat 5395.211 kb on - strandat 5395.211 kb on - strandat 5395.211 kb on - strandat 5395.211 kb on - strandat 5395.213 kb on - strandat 5395.323 kb on + strandat 5395.323 kb on + strandat 5395.324 kb on - strandat 5395.415 kb on + strandat 5395.467 kb on + strandat 5395.517 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
5,394,229 + IAI46_25260 0.41 +0.4
5,394,230 - IAI46_25260 0.41 +0.0
5,394,230 - IAI46_25260 0.41 +0.3
5,394,230 - IAI46_25260 0.41 -0.7
5,394,248 - IAI46_25260 0.48 -0.3
5,394,248 - IAI46_25260 0.48 +0.1
5,395,097 + -1.6
5,395,109 + -1.3
5,395,110 - +0.3
5,395,117 + +0.3
5,395,131 + +0.4
5,395,132 - +1.6
5,395,210 + -0.8
5,395,210 + -0.5
5,395,210 + +0.5
5,395,211 - -0.6
5,395,211 - +0.1
5,395,211 - -0.4
5,395,211 - +0.1
5,395,213 - +0.6
5,395,323 + +0.4
5,395,323 + -0.1
5,395,324 - +0.5
5,395,415 + +0.9
5,395,467 + +0.4
5,395,517 + +1.0

Or see this region's nucleotide sequence