Strain Fitness in Serratia liquefaciens MT49 around IAI46_25075

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25070 and IAI46_25075 are separated by 7 nucleotidesIAI46_25075 and IAI46_25080 are separated by 300 nucleotides IAI46_25070: IAI46_25070 - ribose ABC transporter ATP-binding protein RbsA, at 5,352,225 to 5,353,730 _25070 IAI46_25075: IAI46_25075 - D-ribose pyranase, at 5,353,738 to 5,354,157 _25075 IAI46_25080: IAI46_25080 - low affinity potassium transporter Kup, at 5,354,458 to 5,356,326 _25080 Position (kb) 5353 5354 5355Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5352.738 kb on - strand, within IAI46_25070at 5352.739 kb on + strand, within IAI46_25070at 5352.739 kb on + strand, within IAI46_25070at 5352.739 kb on + strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.740 kb on - strand, within IAI46_25070at 5352.911 kb on + strand, within IAI46_25070at 5352.911 kb on + strand, within IAI46_25070at 5352.911 kb on + strand, within IAI46_25070at 5352.911 kb on + strand, within IAI46_25070at 5352.912 kb on - strand, within IAI46_25070at 5353.030 kb on - strand, within IAI46_25070at 5353.074 kb on - strand, within IAI46_25070at 5353.144 kb on + strand, within IAI46_25070at 5353.144 kb on + strand, within IAI46_25070at 5353.144 kb on + strand, within IAI46_25070at 5353.144 kb on + strand, within IAI46_25070at 5353.144 kb on + strand, within IAI46_25070at 5353.144 kb on + strand, within IAI46_25070at 5353.145 kb on - strand, within IAI46_25070at 5353.145 kb on - strand, within IAI46_25070at 5353.145 kb on - strand, within IAI46_25070at 5353.188 kb on - strand, within IAI46_25070at 5353.191 kb on + strand, within IAI46_25070at 5353.239 kb on - strand, within IAI46_25070at 5353.375 kb on + strand, within IAI46_25070at 5353.375 kb on + strand, within IAI46_25070at 5353.375 kb on + strand, within IAI46_25070at 5353.375 kb on + strand, within IAI46_25070at 5353.376 kb on - strand, within IAI46_25070at 5353.376 kb on - strand, within IAI46_25070at 5353.376 kb on - strand, within IAI46_25070at 5353.403 kb on + strand, within IAI46_25070at 5353.449 kb on + strand, within IAI46_25070at 5353.450 kb on - strand, within IAI46_25070at 5353.450 kb on - strand, within IAI46_25070at 5353.546 kb on + strand, within IAI46_25070at 5353.547 kb on - strand, within IAI46_25070at 5353.569 kb on - strand, within IAI46_25070at 5353.570 kb on + strand, within IAI46_25070at 5353.697 kb on + strandat 5353.720 kb on - strandat 5353.720 kb on - strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.730 kb on + strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.731 kb on - strandat 5353.748 kb on - strandat 5353.748 kb on - strandat 5353.775 kb on + strandat 5353.775 kb on + strandat 5353.831 kb on - strand, within IAI46_25075at 5353.849 kb on - strand, within IAI46_25075at 5353.850 kb on + strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.851 kb on - strand, within IAI46_25075at 5353.907 kb on - strand, within IAI46_25075at 5353.996 kb on + strand, within IAI46_25075at 5353.996 kb on + strand, within IAI46_25075at 5353.997 kb on - strand, within IAI46_25075at 5354.082 kb on + strand, within IAI46_25075at 5354.082 kb on + strand, within IAI46_25075at 5354.083 kb on - strand, within IAI46_25075at 5354.086 kb on + strand, within IAI46_25075at 5354.086 kb on + strand, within IAI46_25075at 5354.086 kb on + strand, within IAI46_25075at 5354.086 kb on + strand, within IAI46_25075at 5354.087 kb on - strand, within IAI46_25075at 5354.087 kb on - strand, within IAI46_25075at 5354.087 kb on - strand, within IAI46_25075at 5354.221 kb on + strandat 5354.221 kb on + strandat 5354.221 kb on + strandat 5354.221 kb on + strandat 5354.221 kb on + strandat 5354.221 kb on + strandat 5354.292 kb on + strandat 5354.293 kb on - strandat 5354.293 kb on - strandat 5354.293 kb on - strandat 5354.293 kb on - strandat 5354.298 kb on - strandat 5354.301 kb on + strandat 5354.301 kb on + strandat 5354.348 kb on + strandat 5354.349 kb on - strandat 5354.349 kb on - strandat 5354.356 kb on + strandat 5354.356 kb on + strandat 5354.356 kb on + strandat 5354.357 kb on - strandat 5354.357 kb on - strandat 5354.357 kb on - strandat 5354.405 kb on - strandat 5354.405 kb on - strandat 5354.415 kb on + strandat 5354.459 kb on + strandat 5354.459 kb on + strandat 5354.460 kb on - strandat 5354.493 kb on + strandat 5354.551 kb on - strandat 5354.551 kb on - strandat 5354.576 kb on + strandat 5354.576 kb on + strandat 5354.616 kb on + strandat 5354.616 kb on + strandat 5354.616 kb on + strandat 5354.708 kb on + strand, within IAI46_25080at 5354.708 kb on + strand, within IAI46_25080at 5354.708 kb on + strand, within IAI46_25080at 5354.708 kb on + strand, within IAI46_25080at 5354.708 kb on + strand, within IAI46_25080at 5354.709 kb on - strand, within IAI46_25080at 5354.709 kb on - strand, within IAI46_25080at 5354.709 kb on - strand, within IAI46_25080at 5354.709 kb on - strand, within IAI46_25080at 5354.777 kb on + strand, within IAI46_25080at 5354.777 kb on + strand, within IAI46_25080at 5354.777 kb on + strand, within IAI46_25080at 5354.778 kb on - strand, within IAI46_25080at 5354.778 kb on - strand, within IAI46_25080at 5354.778 kb on - strand, within IAI46_25080at 5354.778 kb on - strand, within IAI46_25080at 5354.778 kb on - strand, within IAI46_25080at 5354.842 kb on + strand, within IAI46_25080at 5354.842 kb on + strand, within IAI46_25080at 5354.842 kb on + strand, within IAI46_25080at 5354.848 kb on - strand, within IAI46_25080at 5354.889 kb on + strand, within IAI46_25080at 5354.889 kb on + strand, within IAI46_25080at 5354.889 kb on + strand, within IAI46_25080at 5354.890 kb on - strand, within IAI46_25080at 5354.890 kb on - strand, within IAI46_25080at 5355.012 kb on + strand, within IAI46_25080at 5355.013 kb on - strand, within IAI46_25080at 5355.013 kb on - strand, within IAI46_25080at 5355.013 kb on - strand, within IAI46_25080

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,352,738 - IAI46_25070 0.34 +0.1
5,352,739 + IAI46_25070 0.34 -1.1
5,352,739 + IAI46_25070 0.34 +0.2
5,352,739 + IAI46_25070 0.34 -0.2
5,352,740 - IAI46_25070 0.34 +0.1
5,352,740 - IAI46_25070 0.34 +0.2
5,352,740 - IAI46_25070 0.34 -1.0
5,352,740 - IAI46_25070 0.34 +0.8
5,352,740 - IAI46_25070 0.34 -0.3
5,352,740 - IAI46_25070 0.34 -0.2
5,352,740 - IAI46_25070 0.34 -0.1
5,352,740 - IAI46_25070 0.34 -0.3
5,352,740 - IAI46_25070 0.34 +0.5
5,352,740 - IAI46_25070 0.34 +0.5
5,352,740 - IAI46_25070 0.34 -0.3
5,352,911 + IAI46_25070 0.46 +0.3
5,352,911 + IAI46_25070 0.46 -1.5
5,352,911 + IAI46_25070 0.46 -0.2
5,352,911 + IAI46_25070 0.46 -1.5
5,352,912 - IAI46_25070 0.46 +0.2
5,353,030 - IAI46_25070 0.53 +0.5
5,353,074 - IAI46_25070 0.56 -0.1
5,353,144 + IAI46_25070 0.61 +0.2
5,353,144 + IAI46_25070 0.61 +0.2
5,353,144 + IAI46_25070 0.61 +0.1
5,353,144 + IAI46_25070 0.61 +2.6
5,353,144 + IAI46_25070 0.61 +0.8
5,353,144 + IAI46_25070 0.61 +0.1
5,353,145 - IAI46_25070 0.61 -2.9
5,353,145 - IAI46_25070 0.61 +0.9
5,353,145 - IAI46_25070 0.61 -0.2
5,353,188 - IAI46_25070 0.64 -0.1
5,353,191 + IAI46_25070 0.64 -1.6
5,353,239 - IAI46_25070 0.67 -0.8
5,353,375 + IAI46_25070 0.76 -0.5
5,353,375 + IAI46_25070 0.76 +0.3
5,353,375 + IAI46_25070 0.76 +0.5
5,353,375 + IAI46_25070 0.76 +0.5
5,353,376 - IAI46_25070 0.76 -0.8
5,353,376 - IAI46_25070 0.76 +0.5
5,353,376 - IAI46_25070 0.76 +0.2
5,353,403 + IAI46_25070 0.78 -1.2
5,353,449 + IAI46_25070 0.81 -0.6
5,353,450 - IAI46_25070 0.81 -0.7
5,353,450 - IAI46_25070 0.81 +0.4
5,353,546 + IAI46_25070 0.88 +0.0
5,353,547 - IAI46_25070 0.88 -0.1
5,353,569 - IAI46_25070 0.89 +0.1
5,353,570 + IAI46_25070 0.89 +0.6
5,353,697 + -0.6
5,353,720 - +2.1
5,353,720 - -0.0
5,353,730 + -0.2
5,353,730 + -0.7
5,353,730 + +0.5
5,353,730 + -0.4
5,353,730 + -0.6
5,353,730 + +1.1
5,353,730 + +0.0
5,353,730 + +0.7
5,353,730 + -1.2
5,353,730 + -1.4
5,353,730 + -0.2
5,353,730 + -0.6
5,353,730 + +0.1
5,353,730 + +0.2
5,353,730 + +0.0
5,353,730 + -1.1
5,353,730 + +0.6
5,353,731 - +0.6
5,353,731 - -0.5
5,353,731 - -0.2
5,353,731 - -0.2
5,353,731 - +0.1
5,353,731 - +0.6
5,353,731 - +0.2
5,353,731 - -0.1
5,353,748 - +0.3
5,353,748 - -0.4
5,353,775 + +0.3
5,353,775 + -0.6
5,353,831 - IAI46_25075 0.22 +0.2
5,353,849 - IAI46_25075 0.26 +0.9
5,353,850 + IAI46_25075 0.27 -0.7
5,353,851 - IAI46_25075 0.27 +0.3
5,353,851 - IAI46_25075 0.27 -0.3
5,353,851 - IAI46_25075 0.27 +0.8
5,353,851 - IAI46_25075 0.27 -0.6
5,353,851 - IAI46_25075 0.27 -0.3
5,353,851 - IAI46_25075 0.27 -0.2
5,353,851 - IAI46_25075 0.27 +0.6
5,353,851 - IAI46_25075 0.27 +0.1
5,353,851 - IAI46_25075 0.27 +0.6
5,353,851 - IAI46_25075 0.27 -0.3
5,353,851 - IAI46_25075 0.27 +0.3
5,353,907 - IAI46_25075 0.40 +0.5
5,353,996 + IAI46_25075 0.61 -0.1
5,353,996 + IAI46_25075 0.61 +0.7
5,353,997 - IAI46_25075 0.62 -0.3
5,354,082 + IAI46_25075 0.82 +1.3
5,354,082 + IAI46_25075 0.82 +0.3
5,354,083 - IAI46_25075 0.82 -0.4
5,354,086 + IAI46_25075 0.83 +0.9
5,354,086 + IAI46_25075 0.83 +0.1
5,354,086 + IAI46_25075 0.83 +0.8
5,354,086 + IAI46_25075 0.83 -0.6
5,354,087 - IAI46_25075 0.83 +0.1
5,354,087 - IAI46_25075 0.83 +0.0
5,354,087 - IAI46_25075 0.83 +1.4
5,354,221 + +0.5
5,354,221 + +0.3
5,354,221 + -0.7
5,354,221 + +0.5
5,354,221 + +2.2
5,354,221 + +0.6
5,354,292 + +0.1
5,354,293 - +0.1
5,354,293 - -0.4
5,354,293 - +0.6
5,354,293 - -1.0
5,354,298 - +0.1
5,354,301 + -0.2
5,354,301 + -0.7
5,354,348 + +0.4
5,354,349 - -0.5
5,354,349 - +0.7
5,354,356 + -0.6
5,354,356 + -1.1
5,354,356 + -1.4
5,354,357 - -0.0
5,354,357 - -0.1
5,354,357 - -0.9
5,354,405 - -0.4
5,354,405 - -0.2
5,354,415 + -0.0
5,354,459 + +0.1
5,354,459 + -0.3
5,354,460 - -0.4
5,354,493 + -1.0
5,354,551 - -0.9
5,354,551 - +2.1
5,354,576 + +0.1
5,354,576 + -0.3
5,354,616 + -0.4
5,354,616 + +1.0
5,354,616 + -0.6
5,354,708 + IAI46_25080 0.13 +0.2
5,354,708 + IAI46_25080 0.13 +0.7
5,354,708 + IAI46_25080 0.13 +0.7
5,354,708 + IAI46_25080 0.13 -0.3
5,354,708 + IAI46_25080 0.13 +0.6
5,354,709 - IAI46_25080 0.13 -1.6
5,354,709 - IAI46_25080 0.13 +0.4
5,354,709 - IAI46_25080 0.13 +0.4
5,354,709 - IAI46_25080 0.13 +0.1
5,354,777 + IAI46_25080 0.17 -0.3
5,354,777 + IAI46_25080 0.17 +0.1
5,354,777 + IAI46_25080 0.17 +0.1
5,354,778 - IAI46_25080 0.17 +0.5
5,354,778 - IAI46_25080 0.17 +0.4
5,354,778 - IAI46_25080 0.17 +0.0
5,354,778 - IAI46_25080 0.17 +0.1
5,354,778 - IAI46_25080 0.17 +0.2
5,354,842 + IAI46_25080 0.21 +2.1
5,354,842 + IAI46_25080 0.21 +0.2
5,354,842 + IAI46_25080 0.21 -1.0
5,354,848 - IAI46_25080 0.21 +0.1
5,354,889 + IAI46_25080 0.23 -0.4
5,354,889 + IAI46_25080 0.23 +0.2
5,354,889 + IAI46_25080 0.23 -0.3
5,354,890 - IAI46_25080 0.23 +1.6
5,354,890 - IAI46_25080 0.23 +0.6
5,355,012 + IAI46_25080 0.30 -1.0
5,355,013 - IAI46_25080 0.30 +0.7
5,355,013 - IAI46_25080 0.30 -2.0
5,355,013 - IAI46_25080 0.30 +0.1

Or see this region's nucleotide sequence