Strain Fitness in Serratia liquefaciens MT49 around IAI46_24975

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_24970 and IAI46_24975 are separated by 182 nucleotidesIAI46_24975 and IAI46_24980 are separated by 752 nucleotides IAI46_24970: IAI46_24970 - oxygen-independent coproporphyrinogen III oxidase, at 5,328,915 to 5,330,288 _24970 IAI46_24975: IAI46_24975 - Der GTPase-activating protein YihI, at 5,330,471 to 5,331,019 _24975 IAI46_24980: IAI46_24980 - YihA family ribosome biogenesis GTP-binding protein, at 5,331,772 to 5,332,422 _24980 Position (kb) 5330 5331 5332Strain fitness (log2 ratio) -1 0 1 2at 5329.557 kb on - strand, within IAI46_24970at 5329.564 kb on + strand, within IAI46_24970at 5329.564 kb on + strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.568 kb on + strand, within IAI46_24970at 5329.568 kb on + strand, within IAI46_24970at 5329.568 kb on + strand, within IAI46_24970at 5329.569 kb on - strand, within IAI46_24970at 5329.569 kb on - strand, within IAI46_24970at 5329.572 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.594 kb on - strand, within IAI46_24970at 5329.594 kb on - strand, within IAI46_24970at 5329.618 kb on + strand, within IAI46_24970at 5329.618 kb on + strand, within IAI46_24970at 5329.618 kb on + strand, within IAI46_24970at 5329.619 kb on - strand, within IAI46_24970at 5329.654 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.660 kb on - strand, within IAI46_24970at 5329.666 kb on - strand, within IAI46_24970at 5329.667 kb on + strand, within IAI46_24970at 5329.680 kb on - strand, within IAI46_24970at 5329.718 kb on + strand, within IAI46_24970at 5329.719 kb on - strand, within IAI46_24970at 5329.719 kb on - strand, within IAI46_24970at 5329.719 kb on - strand, within IAI46_24970at 5329.763 kb on + strand, within IAI46_24970at 5329.796 kb on + strand, within IAI46_24970at 5329.808 kb on + strand, within IAI46_24970at 5329.939 kb on + strand, within IAI46_24970at 5329.940 kb on - strand, within IAI46_24970at 5329.940 kb on - strand, within IAI46_24970at 5329.940 kb on - strand, within IAI46_24970at 5329.979 kb on + strand, within IAI46_24970at 5329.979 kb on + strand, within IAI46_24970at 5330.035 kb on + strand, within IAI46_24970at 5330.035 kb on + strand, within IAI46_24970at 5330.036 kb on - strand, within IAI46_24970at 5330.036 kb on - strand, within IAI46_24970at 5330.089 kb on + strand, within IAI46_24970at 5330.090 kb on - strand, within IAI46_24970at 5330.114 kb on + strand, within IAI46_24970at 5330.115 kb on - strand, within IAI46_24970at 5330.122 kb on + strand, within IAI46_24970at 5330.122 kb on + strand, within IAI46_24970at 5330.122 kb on + strand, within IAI46_24970at 5330.123 kb on - strand, within IAI46_24970at 5330.183 kb on - strandat 5330.221 kb on + strandat 5330.222 kb on - strandat 5330.236 kb on + strandat 5330.236 kb on + strandat 5330.237 kb on - strandat 5330.237 kb on - strandat 5330.237 kb on - strandat 5330.237 kb on - strandat 5330.237 kb on - strandat 5330.237 kb on - strandat 5330.240 kb on + strandat 5330.242 kb on + strandat 5330.243 kb on - strandat 5330.243 kb on - strandat 5330.341 kb on + strandat 5330.341 kb on + strandat 5330.342 kb on - strandat 5330.399 kb on + strandat 5330.399 kb on + strandat 5330.399 kb on + strandat 5330.399 kb on + strandat 5330.400 kb on - strandat 5330.424 kb on + strandat 5330.425 kb on - strandat 5330.425 kb on - strandat 5330.425 kb on - strandat 5330.439 kb on - strandat 5330.444 kb on + strandat 5330.445 kb on - strandat 5330.445 kb on - strandat 5330.478 kb on - strandat 5330.516 kb on - strandat 5330.516 kb on - strandat 5330.616 kb on + strand, within IAI46_24975at 5330.617 kb on - strand, within IAI46_24975at 5330.656 kb on + strand, within IAI46_24975at 5330.657 kb on - strand, within IAI46_24975at 5330.660 kb on + strand, within IAI46_24975at 5331.020 kb on - strandat 5331.020 kb on - strandat 5331.024 kb on + strandat 5331.024 kb on + strandat 5331.024 kb on + strandat 5331.024 kb on + strandat 5331.024 kb on + strandat 5331.024 kb on + strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.025 kb on - strandat 5331.032 kb on + strandat 5331.032 kb on + strandat 5331.032 kb on + strandat 5331.033 kb on - strandat 5331.033 kb on - strandat 5331.033 kb on - strandat 5331.033 kb on - strandat 5331.033 kb on - strandat 5331.033 kb on - strandat 5331.036 kb on + strandat 5331.036 kb on + strandat 5331.036 kb on + strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.037 kb on - strandat 5331.040 kb on + strandat 5331.040 kb on + strandat 5331.041 kb on - strandat 5331.041 kb on - strandat 5331.041 kb on - strandat 5331.041 kb on - strandat 5331.051 kb on + strandat 5331.051 kb on + strandat 5331.051 kb on + strandat 5331.051 kb on + strandat 5331.052 kb on - strandat 5331.057 kb on + strandat 5331.057 kb on + strandat 5331.057 kb on + strandat 5331.057 kb on + strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.058 kb on - strandat 5331.064 kb on + strandat 5331.064 kb on + strandat 5331.064 kb on + strandat 5331.065 kb on - strandat 5331.084 kb on + strandat 5331.155 kb on + strandat 5331.164 kb on + strandat 5331.164 kb on + strandat 5331.165 kb on - strandat 5331.209 kb on + strandat 5331.210 kb on - strandat 5331.211 kb on + strandat 5331.212 kb on - strandat 5331.212 kb on - strandat 5331.232 kb on + strandat 5331.232 kb on + strandat 5331.327 kb on - strandat 5331.346 kb on + strandat 5331.368 kb on + strandat 5331.368 kb on + strandat 5331.368 kb on + strandat 5331.369 kb on - strandat 5331.369 kb on - strandat 5331.369 kb on - strandat 5331.405 kb on + strandat 5331.405 kb on + strandat 5331.405 kb on + strandat 5331.405 kb on + strandat 5331.406 kb on - strandat 5331.433 kb on + strandat 5331.433 kb on + strandat 5331.433 kb on + strandat 5331.434 kb on - strandat 5331.484 kb on + strandat 5331.489 kb on + strandat 5331.495 kb on - strandat 5331.527 kb on - strandat 5331.527 kb on - strandat 5331.529 kb on + strandat 5331.537 kb on + strandat 5331.614 kb on + strandat 5331.659 kb on - strandat 5331.659 kb on - strandat 5331.659 kb on - strandat 5331.689 kb on - strandat 5331.689 kb on - strandat 5331.713 kb on + strandat 5331.728 kb on + strandat 5331.730 kb on + strandat 5331.745 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
5,329,557 - IAI46_24970 0.47 -0.0
5,329,564 + IAI46_24970 0.47 -0.1
5,329,564 + IAI46_24970 0.47 +0.8
5,329,565 - IAI46_24970 0.47 +0.0
5,329,565 - IAI46_24970 0.47 -0.9
5,329,565 - IAI46_24970 0.47 -0.4
5,329,565 - IAI46_24970 0.47 -0.2
5,329,568 + IAI46_24970 0.48 +0.6
5,329,568 + IAI46_24970 0.48 -0.1
5,329,568 + IAI46_24970 0.48 -0.8
5,329,569 - IAI46_24970 0.48 -0.6
5,329,569 - IAI46_24970 0.48 -0.3
5,329,572 + IAI46_24970 0.48 +0.4
5,329,593 + IAI46_24970 0.49 +0.8
5,329,593 + IAI46_24970 0.49 +0.2
5,329,593 + IAI46_24970 0.49 +0.4
5,329,593 + IAI46_24970 0.49 -0.0
5,329,594 - IAI46_24970 0.49 +0.4
5,329,594 - IAI46_24970 0.49 +2.2
5,329,618 + IAI46_24970 0.51 +0.0
5,329,618 + IAI46_24970 0.51 -0.9
5,329,618 + IAI46_24970 0.51 -0.4
5,329,619 - IAI46_24970 0.51 +0.4
5,329,654 + IAI46_24970 0.54 +0.4
5,329,659 + IAI46_24970 0.54 -0.3
5,329,659 + IAI46_24970 0.54 +0.1
5,329,659 + IAI46_24970 0.54 +0.4
5,329,659 + IAI46_24970 0.54 +0.2
5,329,659 + IAI46_24970 0.54 -0.7
5,329,660 - IAI46_24970 0.54 +0.7
5,329,666 - IAI46_24970 0.55 -0.0
5,329,667 + IAI46_24970 0.55 -0.0
5,329,680 - IAI46_24970 0.56 +0.4
5,329,718 + IAI46_24970 0.58 -0.2
5,329,719 - IAI46_24970 0.59 -0.0
5,329,719 - IAI46_24970 0.59 -0.8
5,329,719 - IAI46_24970 0.59 -0.1
5,329,763 + IAI46_24970 0.62 -0.8
5,329,796 + IAI46_24970 0.64 -0.2
5,329,808 + IAI46_24970 0.65 -0.5
5,329,939 + IAI46_24970 0.75 +0.4
5,329,940 - IAI46_24970 0.75 -0.4
5,329,940 - IAI46_24970 0.75 +0.0
5,329,940 - IAI46_24970 0.75 +0.4
5,329,979 + IAI46_24970 0.77 +0.7
5,329,979 + IAI46_24970 0.77 -0.4
5,330,035 + IAI46_24970 0.82 -0.1
5,330,035 + IAI46_24970 0.82 +1.8
5,330,036 - IAI46_24970 0.82 +0.0
5,330,036 - IAI46_24970 0.82 -0.4
5,330,089 + IAI46_24970 0.85 +0.3
5,330,090 - IAI46_24970 0.86 +0.4
5,330,114 + IAI46_24970 0.87 +0.8
5,330,115 - IAI46_24970 0.87 -0.1
5,330,122 + IAI46_24970 0.88 +0.3
5,330,122 + IAI46_24970 0.88 -0.9
5,330,122 + IAI46_24970 0.88 +0.1
5,330,123 - IAI46_24970 0.88 -1.3
5,330,183 - +0.3
5,330,221 + -0.4
5,330,222 - +0.3
5,330,236 + -0.1
5,330,236 + +0.5
5,330,237 - +0.4
5,330,237 - -0.3
5,330,237 - +0.3
5,330,237 - -0.2
5,330,237 - +0.0
5,330,237 - +0.4
5,330,240 + -0.2
5,330,242 + -0.4
5,330,243 - -0.3
5,330,243 - +0.2
5,330,341 + -0.4
5,330,341 + -0.0
5,330,342 - +0.8
5,330,399 + -0.0
5,330,399 + +0.5
5,330,399 + +0.6
5,330,399 + -0.4
5,330,400 - -0.5
5,330,424 + -0.5
5,330,425 - +0.0
5,330,425 - +0.3
5,330,425 - -1.0
5,330,439 - -0.1
5,330,444 + -0.3
5,330,445 - -0.5
5,330,445 - +0.3
5,330,478 - +0.8
5,330,516 - +1.5
5,330,516 - +0.0
5,330,616 + IAI46_24975 0.26 +0.5
5,330,617 - IAI46_24975 0.27 +0.4
5,330,656 + IAI46_24975 0.34 +0.1
5,330,657 - IAI46_24975 0.34 -0.2
5,330,660 + IAI46_24975 0.34 +0.0
5,331,020 - -0.4
5,331,020 - -1.1
5,331,024 + -0.4
5,331,024 + +0.1
5,331,024 + -1.7
5,331,024 + +0.9
5,331,024 + -0.2
5,331,024 + +0.4
5,331,025 - +0.1
5,331,025 - +0.8
5,331,025 - -0.2
5,331,025 - +0.0
5,331,025 - -0.1
5,331,025 - -0.4
5,331,025 - -0.5
5,331,025 - -0.9
5,331,032 + -0.0
5,331,032 + -0.6
5,331,032 + +0.2
5,331,033 - +0.1
5,331,033 - +0.2
5,331,033 - +0.4
5,331,033 - +0.5
5,331,033 - -0.1
5,331,033 - +0.6
5,331,036 + +0.9
5,331,036 + +0.4
5,331,036 + +0.9
5,331,037 - +0.0
5,331,037 - -0.5
5,331,037 - +0.5
5,331,037 - -0.3
5,331,037 - +0.7
5,331,037 - -0.4
5,331,037 - +0.2
5,331,037 - +1.3
5,331,037 - -1.0
5,331,040 + -0.4
5,331,040 + -0.4
5,331,041 - +0.3
5,331,041 - -0.5
5,331,041 - -1.2
5,331,041 - +0.3
5,331,051 + -0.1
5,331,051 + -0.6
5,331,051 + -0.4
5,331,051 + -1.2
5,331,052 - -0.2
5,331,057 + +1.4
5,331,057 + -0.7
5,331,057 + -1.0
5,331,057 + +0.1
5,331,058 - +0.5
5,331,058 - +0.6
5,331,058 - +0.5
5,331,058 - -0.5
5,331,058 - -0.6
5,331,058 - -0.1
5,331,058 - +0.1
5,331,058 - -0.4
5,331,058 - -0.3
5,331,064 + -0.4
5,331,064 + -0.4
5,331,064 + +0.1
5,331,065 - +0.1
5,331,084 + +0.1
5,331,155 + -0.4
5,331,164 + -0.5
5,331,164 + -1.3
5,331,165 - -0.0
5,331,209 + -0.0
5,331,210 - -0.6
5,331,211 + +0.3
5,331,212 - -0.3
5,331,212 - +0.3
5,331,232 + +0.3
5,331,232 + -0.1
5,331,327 - +0.0
5,331,346 + +0.4
5,331,368 + +0.5
5,331,368 + -0.1
5,331,368 + +0.7
5,331,369 - +1.0
5,331,369 - +0.2
5,331,369 - +0.7
5,331,405 + -0.7
5,331,405 + -0.1
5,331,405 + +0.6
5,331,405 + +0.3
5,331,406 - +0.0
5,331,433 + +0.4
5,331,433 + -0.2
5,331,433 + +0.4
5,331,434 - +0.3
5,331,484 + -0.6
5,331,489 + +0.3
5,331,495 - -1.6
5,331,527 - -0.6
5,331,527 - -0.3
5,331,529 + +0.5
5,331,537 + -0.3
5,331,614 + +0.2
5,331,659 - +0.2
5,331,659 - +0.1
5,331,659 - +0.3
5,331,689 - +0.2
5,331,689 - +0.3
5,331,713 + +1.6
5,331,728 + -0.3
5,331,730 + +0.4
5,331,745 + -0.0

Or see this region's nucleotide sequence