Strain Fitness in Serratia liquefaciens MT49 around IAI46_24885

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24880 and IAI46_24885 are separated by 274 nucleotidesIAI46_24885 and IAI46_24890 are separated by 54 nucleotidesIAI46_24890 and IAI46_24895 are separated by 22 nucleotides IAI46_24880: IAI46_24880 - NAD-dependent DNA ligase LigB, at 5,306,571 to 5,308,274 _24880 IAI46_24885: IAI46_24885 - guanylate kinase, at 5,308,549 to 5,309,172 _24885 IAI46_24890: IAI46_24890 - DNA-directed RNA polymerase subunit omega, at 5,309,227 to 5,309,502 _24890 IAI46_24895: IAI46_24895 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 5,309,525 to 5,311,636 _24895 Position (kb) 5308 5309 5310Strain fitness (log2 ratio) -2 -1 0 1at 5307.550 kb on - strand, within IAI46_24880at 5307.616 kb on - strand, within IAI46_24880at 5307.629 kb on + strand, within IAI46_24880at 5307.752 kb on + strand, within IAI46_24880at 5307.753 kb on - strand, within IAI46_24880at 5307.753 kb on - strand, within IAI46_24880at 5307.756 kb on - strand, within IAI46_24880at 5307.756 kb on - strand, within IAI46_24880at 5307.776 kb on + strand, within IAI46_24880at 5307.777 kb on - strand, within IAI46_24880at 5307.777 kb on - strand, within IAI46_24880at 5307.777 kb on - strand, within IAI46_24880at 5307.777 kb on - strand, within IAI46_24880at 5308.078 kb on + strand, within IAI46_24880at 5308.095 kb on + strand, within IAI46_24880at 5308.114 kb on + strandat 5308.114 kb on + strandat 5308.117 kb on + strandat 5308.117 kb on + strandat 5308.123 kb on - strandat 5308.251 kb on + strandat 5308.252 kb on - strandat 5308.401 kb on + strandat 5308.401 kb on + strandat 5308.465 kb on - strandat 5308.465 kb on - strandat 5308.484 kb on + strandat 5308.492 kb on + strandat 5308.492 kb on + strandat 5308.494 kb on + strandat 5308.532 kb on + strandat 5309.159 kb on + strandat 5309.159 kb on + strandat 5309.159 kb on + strandat 5309.188 kb on + strandat 5309.188 kb on + strandat 5309.226 kb on + strandat 5309.362 kb on + strand, within IAI46_24890

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,307,550 - IAI46_24880 0.57 +0.4
5,307,616 - IAI46_24880 0.61 +0.6
5,307,629 + IAI46_24880 0.62 -1.9
5,307,752 + IAI46_24880 0.69 -0.4
5,307,753 - IAI46_24880 0.69 -0.8
5,307,753 - IAI46_24880 0.69 -0.3
5,307,756 - IAI46_24880 0.70 +0.1
5,307,756 - IAI46_24880 0.70 +0.8
5,307,776 + IAI46_24880 0.71 +0.1
5,307,777 - IAI46_24880 0.71 +0.2
5,307,777 - IAI46_24880 0.71 -0.2
5,307,777 - IAI46_24880 0.71 +0.2
5,307,777 - IAI46_24880 0.71 +0.2
5,308,078 + IAI46_24880 0.88 +0.1
5,308,095 + IAI46_24880 0.89 -1.2
5,308,114 + -0.8
5,308,114 + -0.1
5,308,117 + -0.2
5,308,117 + -0.6
5,308,123 - -1.1
5,308,251 + +0.1
5,308,252 - -0.1
5,308,401 + +0.2
5,308,401 + -0.9
5,308,465 - -0.0
5,308,465 - +0.4
5,308,484 + -0.1
5,308,492 + +0.0
5,308,492 + +0.6
5,308,494 + -0.3
5,308,532 + +0.7
5,309,159 + -0.1
5,309,159 + +0.2
5,309,159 + +0.6
5,309,188 + +0.8
5,309,188 + +0.2
5,309,226 + -0.4
5,309,362 + IAI46_24890 0.49 +0.3

Or see this region's nucleotide sequence