Strain Fitness in Serratia liquefaciens MT49 around IAI46_24685

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24675 and IAI46_24680 are separated by 133 nucleotidesIAI46_24680 and IAI46_24685 are separated by 63 nucleotidesIAI46_24685 and IAI46_24690 are separated by 106 nucleotides IAI46_24675: IAI46_24675 - CHAD domain-containing protein, at 5,268,212 to 5,268,961 _24675 IAI46_24680: IAI46_24680 - DUF3313 domain-containing protein, at 5,269,095 to 5,269,766 _24680 IAI46_24685: IAI46_24685 - serine O-acetyltransferase, at 5,269,830 to 5,270,651 _24685 IAI46_24690: IAI46_24690 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 5,270,758 to 5,271,777 _24690 Position (kb) 5269 5270 5271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5268.959 kb on + strandat 5268.960 kb on - strandat 5268.973 kb on + strandat 5268.973 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.982 kb on - strandat 5269.045 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.053 kb on + strandat 5269.053 kb on + strandat 5269.053 kb on + strandat 5269.054 kb on - strandat 5269.054 kb on - strandat 5269.068 kb on + strandat 5269.084 kb on + strandat 5269.147 kb on + strandat 5269.171 kb on + strand, within IAI46_24680at 5269.172 kb on - strand, within IAI46_24680at 5269.188 kb on + strand, within IAI46_24680at 5269.188 kb on + strand, within IAI46_24680at 5269.189 kb on - strand, within IAI46_24680at 5269.210 kb on - strand, within IAI46_24680at 5269.276 kb on - strand, within IAI46_24680at 5269.276 kb on - strand, within IAI46_24680at 5269.291 kb on - strand, within IAI46_24680at 5269.303 kb on - strand, within IAI46_24680at 5269.315 kb on + strand, within IAI46_24680at 5269.315 kb on + strand, within IAI46_24680at 5269.316 kb on - strand, within IAI46_24680at 5269.316 kb on - strand, within IAI46_24680at 5269.316 kb on - strand, within IAI46_24680at 5269.320 kb on + strand, within IAI46_24680at 5269.361 kb on + strand, within IAI46_24680at 5269.384 kb on - strand, within IAI46_24680at 5269.384 kb on - strand, within IAI46_24680at 5269.384 kb on - strand, within IAI46_24680at 5269.400 kb on + strand, within IAI46_24680at 5269.430 kb on - strand, within IAI46_24680at 5269.430 kb on - strand, within IAI46_24680at 5269.430 kb on - strand, within IAI46_24680at 5269.436 kb on + strand, within IAI46_24680at 5269.436 kb on + strand, within IAI46_24680at 5269.437 kb on - strand, within IAI46_24680at 5269.466 kb on + strand, within IAI46_24680at 5269.467 kb on - strand, within IAI46_24680at 5269.467 kb on - strand, within IAI46_24680at 5269.506 kb on - strand, within IAI46_24680at 5269.506 kb on - strand, within IAI46_24680at 5269.515 kb on + strand, within IAI46_24680at 5269.516 kb on - strand, within IAI46_24680at 5269.593 kb on + strand, within IAI46_24680at 5269.593 kb on + strand, within IAI46_24680at 5269.593 kb on + strand, within IAI46_24680at 5269.594 kb on - strand, within IAI46_24680at 5269.594 kb on - strand, within IAI46_24680at 5269.595 kb on + strand, within IAI46_24680at 5269.652 kb on + strand, within IAI46_24680at 5269.652 kb on + strand, within IAI46_24680at 5269.660 kb on - strand, within IAI46_24680at 5269.660 kb on - strand, within IAI46_24680at 5269.660 kb on - strand, within IAI46_24680at 5269.664 kb on + strand, within IAI46_24680at 5269.665 kb on - strand, within IAI46_24680at 5269.665 kb on - strand, within IAI46_24680at 5269.665 kb on - strand, within IAI46_24680at 5269.665 kb on - strand, within IAI46_24680at 5269.733 kb on + strandat 5269.765 kb on - strandat 5269.812 kb on - strandat 5269.812 kb on - strandat 5269.831 kb on + strandat 5269.863 kb on - strandat 5269.863 kb on - strandat 5269.863 kb on - strandat 5270.748 kb on - strandat 5270.748 kb on - strandat 5270.752 kb on + strandat 5270.753 kb on - strandat 5270.753 kb on - strandat 5270.754 kb on + strandat 5270.803 kb on + strandat 5270.804 kb on - strandat 5270.834 kb on + strandat 5270.834 kb on + strandat 5270.835 kb on - strandat 5270.846 kb on + strandat 5270.899 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.940 kb on + strand, within IAI46_24690at 5270.982 kb on + strand, within IAI46_24690at 5270.983 kb on - strand, within IAI46_24690at 5270.983 kb on - strand, within IAI46_24690at 5270.983 kb on - strand, within IAI46_24690at 5270.985 kb on + strand, within IAI46_24690at 5270.986 kb on - strand, within IAI46_24690at 5270.986 kb on - strand, within IAI46_24690at 5271.121 kb on - strand, within IAI46_24690at 5271.141 kb on + strand, within IAI46_24690at 5271.239 kb on + strand, within IAI46_24690at 5271.502 kb on + strand, within IAI46_24690at 5271.502 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,268,959 + +0.0
5,268,960 - -0.5
5,268,973 + -0.1
5,268,973 + -0.3
5,268,981 + +1.1
5,268,981 + +0.9
5,268,981 + +0.0
5,268,981 + +0.1
5,268,981 + -0.0
5,268,982 - -0.2
5,269,045 + -0.2
5,269,048 + +1.0
5,269,048 + -1.3
5,269,048 + +0.8
5,269,048 + +0.8
5,269,048 + -0.2
5,269,048 + -0.4
5,269,048 + +0.0
5,269,048 + -0.2
5,269,049 - -0.2
5,269,049 - +0.1
5,269,049 - +0.3
5,269,049 - -0.2
5,269,049 - -0.4
5,269,049 - +0.3
5,269,049 - +1.3
5,269,049 - -0.2
5,269,053 + +0.2
5,269,053 + +0.7
5,269,053 + -0.5
5,269,054 - +1.1
5,269,054 - +0.3
5,269,068 + +1.8
5,269,084 + -0.5
5,269,147 + +0.9
5,269,171 + IAI46_24680 0.11 -1.1
5,269,172 - IAI46_24680 0.11 +2.9
5,269,188 + IAI46_24680 0.14 +0.1
5,269,188 + IAI46_24680 0.14 +0.2
5,269,189 - IAI46_24680 0.14 +0.1
5,269,210 - IAI46_24680 0.17 +0.7
5,269,276 - IAI46_24680 0.27 +0.7
5,269,276 - IAI46_24680 0.27 +0.3
5,269,291 - IAI46_24680 0.29 -0.4
5,269,303 - IAI46_24680 0.31 +0.3
5,269,315 + IAI46_24680 0.33 -0.2
5,269,315 + IAI46_24680 0.33 -0.4
5,269,316 - IAI46_24680 0.33 +0.4
5,269,316 - IAI46_24680 0.33 +0.2
5,269,316 - IAI46_24680 0.33 -0.1
5,269,320 + IAI46_24680 0.33 -0.7
5,269,361 + IAI46_24680 0.40 -0.2
5,269,384 - IAI46_24680 0.43 +0.6
5,269,384 - IAI46_24680 0.43 -0.3
5,269,384 - IAI46_24680 0.43 -0.6
5,269,400 + IAI46_24680 0.45 -0.4
5,269,430 - IAI46_24680 0.50 -0.0
5,269,430 - IAI46_24680 0.50 +0.4
5,269,430 - IAI46_24680 0.50 +0.7
5,269,436 + IAI46_24680 0.51 +1.1
5,269,436 + IAI46_24680 0.51 -0.2
5,269,437 - IAI46_24680 0.51 +0.4
5,269,466 + IAI46_24680 0.55 -0.1
5,269,467 - IAI46_24680 0.55 +0.2
5,269,467 - IAI46_24680 0.55 +0.1
5,269,506 - IAI46_24680 0.61 -0.0
5,269,506 - IAI46_24680 0.61 +0.1
5,269,515 + IAI46_24680 0.62 +0.1
5,269,516 - IAI46_24680 0.63 -0.3
5,269,593 + IAI46_24680 0.74 +1.5
5,269,593 + IAI46_24680 0.74 +0.1
5,269,593 + IAI46_24680 0.74 +0.4
5,269,594 - IAI46_24680 0.74 +0.3
5,269,594 - IAI46_24680 0.74 +0.7
5,269,595 + IAI46_24680 0.74 -0.6
5,269,652 + IAI46_24680 0.83 +0.2
5,269,652 + IAI46_24680 0.83 +0.7
5,269,660 - IAI46_24680 0.84 +0.3
5,269,660 - IAI46_24680 0.84 +1.2
5,269,660 - IAI46_24680 0.84 +0.1
5,269,664 + IAI46_24680 0.85 +0.1
5,269,665 - IAI46_24680 0.85 +0.4
5,269,665 - IAI46_24680 0.85 -0.2
5,269,665 - IAI46_24680 0.85 +0.2
5,269,665 - IAI46_24680 0.85 -0.3
5,269,733 + -1.1
5,269,765 - +0.1
5,269,812 - -0.5
5,269,812 - +0.2
5,269,831 + +0.0
5,269,863 - -0.1
5,269,863 - -0.4
5,269,863 - +0.3
5,270,748 - -0.3
5,270,748 - +0.3
5,270,752 + -0.6
5,270,753 - +2.0
5,270,753 - +0.5
5,270,754 + +0.8
5,270,803 + -1.5
5,270,804 - +0.9
5,270,834 + -0.9
5,270,834 + -0.4
5,270,835 - -0.5
5,270,846 + +0.6
5,270,899 + IAI46_24690 0.14 +0.6
5,270,938 + IAI46_24690 0.18 +1.6
5,270,938 + IAI46_24690 0.18 -0.4
5,270,938 + IAI46_24690 0.18 +0.3
5,270,938 + IAI46_24690 0.18 -0.9
5,270,939 - IAI46_24690 0.18 -0.3
5,270,939 - IAI46_24690 0.18 +0.2
5,270,939 - IAI46_24690 0.18 +0.8
5,270,939 - IAI46_24690 0.18 -0.4
5,270,939 - IAI46_24690 0.18 +0.6
5,270,939 - IAI46_24690 0.18 -0.9
5,270,939 - IAI46_24690 0.18 +0.0
5,270,939 - IAI46_24690 0.18 +0.3
5,270,939 - IAI46_24690 0.18 +0.3
5,270,940 + IAI46_24690 0.18 +0.3
5,270,982 + IAI46_24690 0.22 -2.4
5,270,983 - IAI46_24690 0.22 +0.3
5,270,983 - IAI46_24690 0.22 -0.6
5,270,983 - IAI46_24690 0.22 +1.3
5,270,985 + IAI46_24690 0.22 -1.2
5,270,986 - IAI46_24690 0.22 +0.3
5,270,986 - IAI46_24690 0.22 +0.0
5,271,121 - IAI46_24690 0.36 -0.2
5,271,141 + IAI46_24690 0.38 -0.2
5,271,239 + IAI46_24690 0.47 -0.8
5,271,502 + IAI46_24690 0.73 +0.4
5,271,502 + IAI46_24690 0.73 +0.6
5,271,517 + IAI46_24690 0.74 +0.3
5,271,517 + IAI46_24690 0.74 -0.6
5,271,517 + IAI46_24690 0.74 +0.8
5,271,517 + IAI46_24690 0.74 -0.2

Or see this region's nucleotide sequence