Strain Fitness in Serratia liquefaciens MT49 around IAI46_24445

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24440 and IAI46_24445 are separated by 426 nucleotidesIAI46_24445 and IAI46_24450 overlap by 56 nucleotides IAI46_24440: IAI46_24440 - 16S ribosomal RNA, at 5,215,771 to 5,217,315 _24440 IAI46_24445: IAI46_24445 - glutamate racemase, at 5,217,742 to 5,218,605 _24445 IAI46_24450: IAI46_24450 - TonB-dependent vitamin B12 receptor BtuB, at 5,218,550 to 5,220,421 _24450 Position (kb) 5217 5218 5219Strain fitness (log2 ratio) -1 0 1 2at 5217.503 kb on - strandat 5217.503 kb on - strandat 5217.503 kb on - strandat 5217.534 kb on - strandat 5217.534 kb on - strandat 5217.534 kb on - strandat 5217.665 kb on + strandat 5217.667 kb on + strandat 5217.705 kb on - strandat 5217.705 kb on - strandat 5217.743 kb on + strandat 5218.735 kb on - strandat 5218.743 kb on + strand, within IAI46_24450at 5218.743 kb on + strand, within IAI46_24450at 5218.744 kb on - strand, within IAI46_24450at 5218.750 kb on + strand, within IAI46_24450at 5218.750 kb on + strand, within IAI46_24450at 5218.750 kb on + strand, within IAI46_24450at 5218.755 kb on + strand, within IAI46_24450at 5218.756 kb on - strand, within IAI46_24450at 5218.770 kb on + strand, within IAI46_24450at 5218.771 kb on - strand, within IAI46_24450at 5218.771 kb on - strand, within IAI46_24450at 5218.771 kb on - strand, within IAI46_24450at 5218.776 kb on + strand, within IAI46_24450at 5218.776 kb on + strand, within IAI46_24450at 5218.776 kb on + strand, within IAI46_24450at 5218.776 kb on + strand, within IAI46_24450at 5218.776 kb on + strand, within IAI46_24450at 5218.777 kb on - strand, within IAI46_24450at 5218.777 kb on - strand, within IAI46_24450at 5218.777 kb on - strand, within IAI46_24450at 5218.777 kb on - strand, within IAI46_24450at 5218.777 kb on - strand, within IAI46_24450at 5218.800 kb on + strand, within IAI46_24450at 5218.821 kb on + strand, within IAI46_24450at 5218.821 kb on + strand, within IAI46_24450at 5218.874 kb on - strand, within IAI46_24450at 5218.887 kb on + strand, within IAI46_24450at 5218.887 kb on + strand, within IAI46_24450at 5218.887 kb on + strand, within IAI46_24450at 5218.887 kb on + strand, within IAI46_24450at 5218.888 kb on - strand, within IAI46_24450at 5218.888 kb on - strand, within IAI46_24450at 5218.894 kb on - strand, within IAI46_24450at 5218.894 kb on - strand, within IAI46_24450at 5218.894 kb on - strand, within IAI46_24450at 5218.936 kb on + strand, within IAI46_24450at 5218.936 kb on + strand, within IAI46_24450at 5218.937 kb on - strand, within IAI46_24450at 5218.946 kb on - strand, within IAI46_24450at 5218.951 kb on + strand, within IAI46_24450at 5218.951 kb on + strand, within IAI46_24450at 5218.952 kb on - strand, within IAI46_24450at 5218.974 kb on + strand, within IAI46_24450at 5218.974 kb on + strand, within IAI46_24450at 5218.974 kb on + strand, within IAI46_24450at 5218.974 kb on + strand, within IAI46_24450at 5218.974 kb on + strand, within IAI46_24450at 5218.975 kb on - strand, within IAI46_24450at 5218.975 kb on - strand, within IAI46_24450at 5218.975 kb on - strand, within IAI46_24450at 5218.977 kb on + strand, within IAI46_24450at 5218.977 kb on + strand, within IAI46_24450at 5218.978 kb on - strand, within IAI46_24450at 5218.978 kb on - strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.983 kb on + strand, within IAI46_24450at 5218.984 kb on - strand, within IAI46_24450at 5218.984 kb on - strand, within IAI46_24450at 5218.984 kb on - strand, within IAI46_24450at 5218.984 kb on - strand, within IAI46_24450at 5218.984 kb on - strand, within IAI46_24450at 5219.020 kb on + strand, within IAI46_24450at 5219.021 kb on - strand, within IAI46_24450at 5219.116 kb on + strand, within IAI46_24450at 5219.119 kb on + strand, within IAI46_24450at 5219.119 kb on + strand, within IAI46_24450at 5219.120 kb on - strand, within IAI46_24450at 5219.137 kb on - strand, within IAI46_24450at 5219.149 kb on + strand, within IAI46_24450at 5219.149 kb on + strand, within IAI46_24450at 5219.149 kb on + strand, within IAI46_24450at 5219.150 kb on - strand, within IAI46_24450at 5219.150 kb on - strand, within IAI46_24450at 5219.150 kb on - strand, within IAI46_24450at 5219.150 kb on - strand, within IAI46_24450at 5219.153 kb on - strand, within IAI46_24450at 5219.153 kb on - strand, within IAI46_24450at 5219.203 kb on + strand, within IAI46_24450at 5219.204 kb on - strand, within IAI46_24450at 5219.319 kb on + strand, within IAI46_24450at 5219.414 kb on - strand, within IAI46_24450at 5219.423 kb on + strand, within IAI46_24450at 5219.424 kb on - strand, within IAI46_24450at 5219.434 kb on + strand, within IAI46_24450at 5219.434 kb on + strand, within IAI46_24450at 5219.454 kb on + strand, within IAI46_24450at 5219.454 kb on + strand, within IAI46_24450at 5219.454 kb on + strand, within IAI46_24450at 5219.454 kb on + strand, within IAI46_24450at 5219.454 kb on + strand, within IAI46_24450at 5219.455 kb on - strand, within IAI46_24450at 5219.455 kb on - strand, within IAI46_24450at 5219.455 kb on - strand, within IAI46_24450at 5219.455 kb on - strand, within IAI46_24450at 5219.455 kb on - strand, within IAI46_24450at 5219.490 kb on + strand, within IAI46_24450at 5219.490 kb on + strand, within IAI46_24450at 5219.490 kb on + strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.491 kb on - strand, within IAI46_24450at 5219.511 kb on + strand, within IAI46_24450at 5219.512 kb on - strand, within IAI46_24450at 5219.512 kb on - strand, within IAI46_24450at 5219.518 kb on - strand, within IAI46_24450at 5219.518 kb on - strand, within IAI46_24450at 5219.535 kb on + strand, within IAI46_24450at 5219.535 kb on + strand, within IAI46_24450at 5219.536 kb on - strand, within IAI46_24450at 5219.536 kb on - strand, within IAI46_24450at 5219.559 kb on + strand, within IAI46_24450at 5219.559 kb on + strand, within IAI46_24450at 5219.559 kb on + strand, within IAI46_24450at 5219.560 kb on - strand, within IAI46_24450at 5219.560 kb on - strand, within IAI46_24450at 5219.573 kb on - strand, within IAI46_24450at 5219.573 kb on - strand, within IAI46_24450at 5219.573 kb on - strand, within IAI46_24450at 5219.575 kb on - strand, within IAI46_24450at 5219.575 kb on - strand, within IAI46_24450at 5219.575 kb on - strand, within IAI46_24450at 5219.588 kb on - strand, within IAI46_24450at 5219.602 kb on + strand, within IAI46_24450at 5219.603 kb on - strand, within IAI46_24450at 5219.604 kb on + strand, within IAI46_24450at 5219.605 kb on - strand, within IAI46_24450at 5219.605 kb on - strand, within IAI46_24450at 5219.605 kb on - strand, within IAI46_24450at 5219.605 kb on - strand, within IAI46_24450

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,217,503 - -1.3
5,217,503 - -0.6
5,217,503 - +0.2
5,217,534 - +0.4
5,217,534 - -1.3
5,217,534 - -0.6
5,217,665 + -0.2
5,217,667 + -0.2
5,217,705 - +0.3
5,217,705 - -1.2
5,217,743 + -0.4
5,218,735 - +0.2
5,218,743 + IAI46_24450 0.10 +0.3
5,218,743 + IAI46_24450 0.10 +0.2
5,218,744 - IAI46_24450 0.10 +0.1
5,218,750 + IAI46_24450 0.11 +0.1
5,218,750 + IAI46_24450 0.11 +1.1
5,218,750 + IAI46_24450 0.11 -0.4
5,218,755 + IAI46_24450 0.11 +0.2
5,218,756 - IAI46_24450 0.11 -0.3
5,218,770 + IAI46_24450 0.12 +0.0
5,218,771 - IAI46_24450 0.12 +0.7
5,218,771 - IAI46_24450 0.12 -0.2
5,218,771 - IAI46_24450 0.12 +1.2
5,218,776 + IAI46_24450 0.12 -0.1
5,218,776 + IAI46_24450 0.12 +0.2
5,218,776 + IAI46_24450 0.12 -0.6
5,218,776 + IAI46_24450 0.12 -0.1
5,218,776 + IAI46_24450 0.12 +0.1
5,218,777 - IAI46_24450 0.12 -0.2
5,218,777 - IAI46_24450 0.12 +0.3
5,218,777 - IAI46_24450 0.12 +1.2
5,218,777 - IAI46_24450 0.12 +0.7
5,218,777 - IAI46_24450 0.12 +0.5
5,218,800 + IAI46_24450 0.13 -0.2
5,218,821 + IAI46_24450 0.14 +0.3
5,218,821 + IAI46_24450 0.14 +0.1
5,218,874 - IAI46_24450 0.17 +0.0
5,218,887 + IAI46_24450 0.18 +0.7
5,218,887 + IAI46_24450 0.18 +1.4
5,218,887 + IAI46_24450 0.18 +0.8
5,218,887 + IAI46_24450 0.18 +0.4
5,218,888 - IAI46_24450 0.18 +0.5
5,218,888 - IAI46_24450 0.18 +1.1
5,218,894 - IAI46_24450 0.18 +0.3
5,218,894 - IAI46_24450 0.18 +1.1
5,218,894 - IAI46_24450 0.18 -0.7
5,218,936 + IAI46_24450 0.21 +1.1
5,218,936 + IAI46_24450 0.21 -0.4
5,218,937 - IAI46_24450 0.21 -0.2
5,218,946 - IAI46_24450 0.21 -0.5
5,218,951 + IAI46_24450 0.21 -0.9
5,218,951 + IAI46_24450 0.21 -0.2
5,218,952 - IAI46_24450 0.21 +1.1
5,218,974 + IAI46_24450 0.23 -0.9
5,218,974 + IAI46_24450 0.23 +0.5
5,218,974 + IAI46_24450 0.23 +0.6
5,218,974 + IAI46_24450 0.23 +0.3
5,218,974 + IAI46_24450 0.23 -0.1
5,218,975 - IAI46_24450 0.23 +0.3
5,218,975 - IAI46_24450 0.23 -0.4
5,218,975 - IAI46_24450 0.23 -0.2
5,218,977 + IAI46_24450 0.23 +0.6
5,218,977 + IAI46_24450 0.23 +0.3
5,218,978 - IAI46_24450 0.23 +0.2
5,218,978 - IAI46_24450 0.23 -0.6
5,218,983 + IAI46_24450 0.23 +1.2
5,218,983 + IAI46_24450 0.23 +0.0
5,218,983 + IAI46_24450 0.23 -0.1
5,218,983 + IAI46_24450 0.23 +0.3
5,218,983 + IAI46_24450 0.23 +0.5
5,218,983 + IAI46_24450 0.23 -0.4
5,218,983 + IAI46_24450 0.23 +1.2
5,218,983 + IAI46_24450 0.23 -0.9
5,218,983 + IAI46_24450 0.23 -0.7
5,218,983 + IAI46_24450 0.23 +0.3
5,218,983 + IAI46_24450 0.23 +0.5
5,218,983 + IAI46_24450 0.23 +0.8
5,218,984 - IAI46_24450 0.23 -0.2
5,218,984 - IAI46_24450 0.23 +0.9
5,218,984 - IAI46_24450 0.23 -0.0
5,218,984 - IAI46_24450 0.23 +1.0
5,218,984 - IAI46_24450 0.23 +1.0
5,219,020 + IAI46_24450 0.25 -0.2
5,219,021 - IAI46_24450 0.25 +1.1
5,219,116 + IAI46_24450 0.30 +1.4
5,219,119 + IAI46_24450 0.30 -0.5
5,219,119 + IAI46_24450 0.30 +1.9
5,219,120 - IAI46_24450 0.30 -0.6
5,219,137 - IAI46_24450 0.31 -1.1
5,219,149 + IAI46_24450 0.32 +0.5
5,219,149 + IAI46_24450 0.32 -0.1
5,219,149 + IAI46_24450 0.32 +0.2
5,219,150 - IAI46_24450 0.32 -0.2
5,219,150 - IAI46_24450 0.32 -0.1
5,219,150 - IAI46_24450 0.32 -0.1
5,219,150 - IAI46_24450 0.32 +0.0
5,219,153 - IAI46_24450 0.32 +0.4
5,219,153 - IAI46_24450 0.32 -0.1
5,219,203 + IAI46_24450 0.35 +0.7
5,219,204 - IAI46_24450 0.35 +0.4
5,219,319 + IAI46_24450 0.41 +0.5
5,219,414 - IAI46_24450 0.46 -0.3
5,219,423 + IAI46_24450 0.47 +0.3
5,219,424 - IAI46_24450 0.47 +1.0
5,219,434 + IAI46_24450 0.47 +0.7
5,219,434 + IAI46_24450 0.47 +0.1
5,219,454 + IAI46_24450 0.48 -0.5
5,219,454 + IAI46_24450 0.48 +0.3
5,219,454 + IAI46_24450 0.48 -0.1
5,219,454 + IAI46_24450 0.48 +1.1
5,219,454 + IAI46_24450 0.48 -0.1
5,219,455 - IAI46_24450 0.48 -0.6
5,219,455 - IAI46_24450 0.48 -0.6
5,219,455 - IAI46_24450 0.48 +0.1
5,219,455 - IAI46_24450 0.48 -1.6
5,219,455 - IAI46_24450 0.48 +0.5
5,219,490 + IAI46_24450 0.50 -0.4
5,219,490 + IAI46_24450 0.50 +0.3
5,219,490 + IAI46_24450 0.50 -1.7
5,219,491 - IAI46_24450 0.50 -0.3
5,219,491 - IAI46_24450 0.50 -0.2
5,219,491 - IAI46_24450 0.50 +0.2
5,219,491 - IAI46_24450 0.50 +0.3
5,219,491 - IAI46_24450 0.50 +0.4
5,219,491 - IAI46_24450 0.50 +0.3
5,219,491 - IAI46_24450 0.50 -0.4
5,219,491 - IAI46_24450 0.50 +0.3
5,219,491 - IAI46_24450 0.50 +0.1
5,219,491 - IAI46_24450 0.50 +0.3
5,219,511 + IAI46_24450 0.51 +1.3
5,219,512 - IAI46_24450 0.51 +0.3
5,219,512 - IAI46_24450 0.51 +0.4
5,219,518 - IAI46_24450 0.52 +0.6
5,219,518 - IAI46_24450 0.52 -0.3
5,219,535 + IAI46_24450 0.53 +0.0
5,219,535 + IAI46_24450 0.53 -0.7
5,219,536 - IAI46_24450 0.53 -0.3
5,219,536 - IAI46_24450 0.53 +0.1
5,219,559 + IAI46_24450 0.54 -0.4
5,219,559 + IAI46_24450 0.54 -0.8
5,219,559 + IAI46_24450 0.54 +0.9
5,219,560 - IAI46_24450 0.54 -0.3
5,219,560 - IAI46_24450 0.54 +0.5
5,219,573 - IAI46_24450 0.55 +0.6
5,219,573 - IAI46_24450 0.55 -0.4
5,219,573 - IAI46_24450 0.55 -1.3
5,219,575 - IAI46_24450 0.55 -0.5
5,219,575 - IAI46_24450 0.55 -0.2
5,219,575 - IAI46_24450 0.55 +0.5
5,219,588 - IAI46_24450 0.55 +0.5
5,219,602 + IAI46_24450 0.56 +0.6
5,219,603 - IAI46_24450 0.56 -0.3
5,219,604 + IAI46_24450 0.56 -0.1
5,219,605 - IAI46_24450 0.56 +0.3
5,219,605 - IAI46_24450 0.56 +0.0
5,219,605 - IAI46_24450 0.56 -0.1
5,219,605 - IAI46_24450 0.56 +0.1

Or see this region's nucleotide sequence