Strain Fitness in Serratia liquefaciens MT49 around IAI46_22950

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22945 and IAI46_22950 are separated by 17 nucleotidesIAI46_22950 and IAI46_22955 are separated by 180 nucleotides IAI46_22945: IAI46_22945 - alanine racemase, at 4,893,856 to 4,894,935 _22945 IAI46_22950: IAI46_22950 - replicative DNA helicase, at 4,894,953 to 4,896,377 _22950 IAI46_22955: IAI46_22955 - quinone oxidoreductase, at 4,896,558 to 4,897,547 _22955 Position (kb) 4894 4895 4896 4897Strain fitness (log2 ratio) -2 -1 0 1 2at 4894.083 kb on + strand, within IAI46_22945at 4894.147 kb on - strand, within IAI46_22945at 4894.181 kb on - strand, within IAI46_22945at 4894.181 kb on - strand, within IAI46_22945at 4894.293 kb on - strand, within IAI46_22945at 4894.365 kb on + strand, within IAI46_22945at 4894.365 kb on + strand, within IAI46_22945at 4894.470 kb on + strand, within IAI46_22945at 4894.471 kb on - strand, within IAI46_22945at 4894.633 kb on - strand, within IAI46_22945at 4894.657 kb on - strand, within IAI46_22945at 4894.772 kb on + strand, within IAI46_22945at 4894.891 kb on - strandat 4894.891 kb on - strandat 4894.916 kb on - strandat 4894.946 kb on + strandat 4894.966 kb on + strandat 4894.966 kb on + strandat 4894.966 kb on + strandat 4894.966 kb on + strandat 4894.966 kb on + strandat 4894.967 kb on - strandat 4894.967 kb on - strandat 4894.981 kb on + strandat 4894.982 kb on - strandat 4894.982 kb on - strandat 4896.428 kb on + strandat 4896.428 kb on + strandat 4896.428 kb on + strandat 4896.428 kb on + strandat 4896.428 kb on + strandat 4896.428 kb on + strandat 4896.428 kb on + strandat 4896.429 kb on - strandat 4896.429 kb on - strandat 4896.429 kb on - strandat 4896.429 kb on - strandat 4896.439 kb on + strandat 4896.459 kb on + strandat 4896.459 kb on + strandat 4896.459 kb on + strandat 4896.477 kb on + strandat 4896.512 kb on - strandat 4896.514 kb on + strandat 4896.514 kb on + strandat 4896.523 kb on + strandat 4896.552 kb on - strandat 4896.552 kb on - strandat 4896.557 kb on + strandat 4896.609 kb on + strandat 4896.609 kb on + strandat 4896.610 kb on - strandat 4896.610 kb on - strandat 4896.610 kb on - strandat 4896.610 kb on - strandat 4896.610 kb on - strandat 4896.610 kb on - strandat 4896.681 kb on + strand, within IAI46_22955at 4896.681 kb on + strand, within IAI46_22955at 4896.681 kb on + strand, within IAI46_22955at 4896.681 kb on + strand, within IAI46_22955at 4896.681 kb on + strand, within IAI46_22955at 4896.682 kb on - strand, within IAI46_22955at 4896.682 kb on - strand, within IAI46_22955at 4896.682 kb on - strand, within IAI46_22955at 4896.693 kb on + strand, within IAI46_22955at 4896.693 kb on + strand, within IAI46_22955at 4896.693 kb on + strand, within IAI46_22955at 4896.694 kb on - strand, within IAI46_22955at 4896.694 kb on - strand, within IAI46_22955at 4896.694 kb on - strand, within IAI46_22955at 4896.694 kb on - strand, within IAI46_22955at 4896.694 kb on - strand, within IAI46_22955at 4896.697 kb on + strand, within IAI46_22955at 4896.697 kb on + strand, within IAI46_22955at 4896.697 kb on + strand, within IAI46_22955at 4896.697 kb on + strand, within IAI46_22955at 4896.698 kb on - strand, within IAI46_22955at 4896.709 kb on + strand, within IAI46_22955at 4896.712 kb on - strand, within IAI46_22955at 4896.817 kb on - strand, within IAI46_22955at 4896.840 kb on + strand, within IAI46_22955at 4896.840 kb on + strand, within IAI46_22955at 4896.840 kb on + strand, within IAI46_22955at 4896.841 kb on - strand, within IAI46_22955at 4897.132 kb on - strand, within IAI46_22955at 4897.132 kb on - strand, within IAI46_22955at 4897.197 kb on + strand, within IAI46_22955at 4897.217 kb on + strand, within IAI46_22955at 4897.335 kb on + strand, within IAI46_22955at 4897.335 kb on + strand, within IAI46_22955at 4897.335 kb on + strand, within IAI46_22955at 4897.335 kb on + strand, within IAI46_22955at 4897.335 kb on + strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.336 kb on - strand, within IAI46_22955at 4897.363 kb on - strand, within IAI46_22955

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,894,083 + IAI46_22945 0.21 +1.8
4,894,147 - IAI46_22945 0.27 +0.4
4,894,181 - IAI46_22945 0.30 +0.4
4,894,181 - IAI46_22945 0.30 +0.1
4,894,293 - IAI46_22945 0.40 +2.6
4,894,365 + IAI46_22945 0.47 +0.3
4,894,365 + IAI46_22945 0.47 -0.3
4,894,470 + IAI46_22945 0.57 -0.0
4,894,471 - IAI46_22945 0.57 -0.2
4,894,633 - IAI46_22945 0.72 +0.8
4,894,657 - IAI46_22945 0.74 +0.1
4,894,772 + IAI46_22945 0.85 +0.4
4,894,891 - +0.2
4,894,891 - +0.1
4,894,916 - -0.1
4,894,946 + +0.2
4,894,966 + -0.3
4,894,966 + -1.2
4,894,966 + -0.2
4,894,966 + +0.7
4,894,966 + +0.3
4,894,967 - +1.0
4,894,967 - -0.2
4,894,981 + -0.2
4,894,982 - +0.3
4,894,982 - -0.3
4,896,428 + +0.8
4,896,428 + -0.9
4,896,428 + +1.3
4,896,428 + +1.7
4,896,428 + +0.9
4,896,428 + +1.1
4,896,428 + -0.4
4,896,429 - +1.1
4,896,429 - +0.0
4,896,429 - +0.0
4,896,429 - +0.1
4,896,439 + +0.2
4,896,459 + -0.1
4,896,459 + +0.3
4,896,459 + +0.1
4,896,477 + -2.0
4,896,512 - -0.3
4,896,514 + +0.9
4,896,514 + -0.3
4,896,523 + +0.1
4,896,552 - -0.2
4,896,552 - -0.0
4,896,557 + +0.2
4,896,609 + +0.5
4,896,609 + -0.1
4,896,610 - -0.1
4,896,610 - -0.0
4,896,610 - +0.2
4,896,610 - +0.0
4,896,610 - +0.0
4,896,610 - -1.3
4,896,681 + IAI46_22955 0.12 -0.1
4,896,681 + IAI46_22955 0.12 +0.1
4,896,681 + IAI46_22955 0.12 +0.1
4,896,681 + IAI46_22955 0.12 -0.4
4,896,681 + IAI46_22955 0.12 -0.3
4,896,682 - IAI46_22955 0.13 +0.2
4,896,682 - IAI46_22955 0.13 -0.0
4,896,682 - IAI46_22955 0.13 +0.3
4,896,693 + IAI46_22955 0.14 -0.5
4,896,693 + IAI46_22955 0.14 -1.0
4,896,693 + IAI46_22955 0.14 -0.5
4,896,694 - IAI46_22955 0.14 -0.2
4,896,694 - IAI46_22955 0.14 +0.8
4,896,694 - IAI46_22955 0.14 -0.2
4,896,694 - IAI46_22955 0.14 -0.1
4,896,694 - IAI46_22955 0.14 -0.1
4,896,697 + IAI46_22955 0.14 -0.1
4,896,697 + IAI46_22955 0.14 +0.0
4,896,697 + IAI46_22955 0.14 +1.1
4,896,697 + IAI46_22955 0.14 -0.1
4,896,698 - IAI46_22955 0.14 -0.9
4,896,709 + IAI46_22955 0.15 +0.2
4,896,712 - IAI46_22955 0.16 -0.1
4,896,817 - IAI46_22955 0.26 -0.4
4,896,840 + IAI46_22955 0.28 +0.7
4,896,840 + IAI46_22955 0.28 +0.8
4,896,840 + IAI46_22955 0.28 +0.3
4,896,841 - IAI46_22955 0.29 -0.2
4,897,132 - IAI46_22955 0.58 -0.0
4,897,132 - IAI46_22955 0.58 +0.5
4,897,197 + IAI46_22955 0.65 +0.2
4,897,217 + IAI46_22955 0.67 +1.1
4,897,335 + IAI46_22955 0.78 +0.1
4,897,335 + IAI46_22955 0.78 +0.0
4,897,335 + IAI46_22955 0.78 +0.1
4,897,335 + IAI46_22955 0.78 +0.4
4,897,335 + IAI46_22955 0.78 -0.2
4,897,336 - IAI46_22955 0.79 +0.8
4,897,336 - IAI46_22955 0.79 +0.1
4,897,336 - IAI46_22955 0.79 -0.6
4,897,336 - IAI46_22955 0.79 +0.3
4,897,336 - IAI46_22955 0.79 +0.5
4,897,336 - IAI46_22955 0.79 +0.1
4,897,336 - IAI46_22955 0.79 +0.6
4,897,363 - IAI46_22955 0.81 +0.6

Or see this region's nucleotide sequence