Strain Fitness in Serratia liquefaciens MT49 around IAI46_22785

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22775 and IAI46_22780 are separated by 21 nucleotidesIAI46_22780 and IAI46_22785 are separated by 133 nucleotidesIAI46_22785 and IAI46_22790 are separated by 194 nucleotides IAI46_22775: IAI46_22775 - tRNA dihydrouridine synthase DusB, at 4,849,312 to 4,850,277 _22775 IAI46_22780: IAI46_22780 - DNA-binding transcriptional regulator Fis, at 4,850,299 to 4,850,595 _22780 IAI46_22785: IAI46_22785 - APC family permease, at 4,850,729 to 4,852,126 _22785 IAI46_22790: IAI46_22790 - glutamate decarboxylase, at 4,852,321 to 4,853,667 _22790 Position (kb) 4850 4851 4852 4853Strain fitness (log2 ratio) -2 -1 0 1 2at 4849.759 kb on - strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.798 kb on - strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.858 kb on + strand, within IAI46_22775at 4849.932 kb on + strand, within IAI46_22775at 4849.954 kb on + strand, within IAI46_22775at 4849.955 kb on - strand, within IAI46_22775at 4850.029 kb on + strand, within IAI46_22775at 4850.097 kb on + strand, within IAI46_22775at 4850.151 kb on + strand, within IAI46_22775at 4850.159 kb on + strand, within IAI46_22775at 4850.159 kb on + strand, within IAI46_22775at 4850.298 kb on + strandat 4850.596 kb on + strandat 4850.597 kb on - strandat 4850.599 kb on + strandat 4850.599 kb on + strandat 4850.599 kb on + strandat 4850.599 kb on + strandat 4850.600 kb on - strandat 4850.600 kb on - strandat 4850.669 kb on + strandat 4850.720 kb on + strandat 4850.720 kb on + strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.727 kb on + strandat 4850.727 kb on + strandat 4850.730 kb on + strandat 4850.730 kb on + strandat 4850.731 kb on - strandat 4850.731 kb on - strandat 4850.814 kb on + strandat 4850.814 kb on + strandat 4850.815 kb on - strandat 4850.848 kb on + strandat 4850.848 kb on + strandat 4850.849 kb on - strandat 4850.886 kb on + strand, within IAI46_22785at 4850.886 kb on + strand, within IAI46_22785at 4850.918 kb on + strand, within IAI46_22785at 4850.919 kb on - strand, within IAI46_22785at 4850.919 kb on - strand, within IAI46_22785at 4850.919 kb on - strand, within IAI46_22785at 4850.941 kb on - strand, within IAI46_22785at 4850.997 kb on + strand, within IAI46_22785at 4850.998 kb on - strand, within IAI46_22785at 4850.998 kb on - strand, within IAI46_22785at 4851.038 kb on + strand, within IAI46_22785at 4851.038 kb on + strand, within IAI46_22785at 4851.039 kb on - strand, within IAI46_22785at 4851.122 kb on + strand, within IAI46_22785at 4851.136 kb on + strand, within IAI46_22785at 4851.248 kb on + strand, within IAI46_22785at 4851.341 kb on - strand, within IAI46_22785at 4851.373 kb on - strand, within IAI46_22785at 4851.373 kb on - strand, within IAI46_22785at 4851.390 kb on - strand, within IAI46_22785at 4851.428 kb on - strand, within IAI46_22785at 4851.440 kb on - strand, within IAI46_22785at 4851.461 kb on - strand, within IAI46_22785at 4851.483 kb on + strand, within IAI46_22785at 4851.587 kb on - strand, within IAI46_22785at 4851.593 kb on - strand, within IAI46_22785at 4851.593 kb on - strand, within IAI46_22785at 4851.647 kb on + strand, within IAI46_22785at 4851.770 kb on - strand, within IAI46_22785at 4851.770 kb on - strand, within IAI46_22785at 4851.773 kb on + strand, within IAI46_22785at 4851.773 kb on + strand, within IAI46_22785at 4851.774 kb on - strand, within IAI46_22785at 4851.774 kb on - strand, within IAI46_22785at 4851.784 kb on + strand, within IAI46_22785at 4851.785 kb on - strand, within IAI46_22785at 4851.824 kb on + strand, within IAI46_22785at 4851.825 kb on - strand, within IAI46_22785at 4851.825 kb on - strand, within IAI46_22785at 4851.848 kb on - strand, within IAI46_22785at 4851.859 kb on + strand, within IAI46_22785at 4851.860 kb on - strand, within IAI46_22785at 4851.860 kb on - strand, within IAI46_22785at 4851.860 kb on - strand, within IAI46_22785at 4851.890 kb on + strand, within IAI46_22785at 4851.890 kb on + strand, within IAI46_22785at 4851.894 kb on + strand, within IAI46_22785at 4851.894 kb on + strand, within IAI46_22785at 4851.901 kb on - strand, within IAI46_22785at 4851.901 kb on - strand, within IAI46_22785at 4851.901 kb on - strand, within IAI46_22785at 4852.004 kb on - strandat 4852.017 kb on + strandat 4852.063 kb on + strandat 4852.064 kb on - strandat 4852.166 kb on + strandat 4852.166 kb on + strandat 4852.166 kb on + strandat 4852.167 kb on - strandat 4852.167 kb on - strandat 4852.167 kb on - strandat 4852.167 kb on - strandat 4852.167 kb on - strandat 4852.167 kb on - strandat 4852.185 kb on + strandat 4852.295 kb on - strandat 4852.360 kb on + strandat 4852.360 kb on + strandat 4852.424 kb on + strandat 4852.526 kb on + strand, within IAI46_22790at 4852.527 kb on - strand, within IAI46_22790at 4852.543 kb on + strand, within IAI46_22790at 4852.543 kb on + strand, within IAI46_22790at 4852.543 kb on + strand, within IAI46_22790at 4852.595 kb on + strand, within IAI46_22790at 4852.595 kb on + strand, within IAI46_22790at 4852.596 kb on - strand, within IAI46_22790at 4852.629 kb on + strand, within IAI46_22790at 4852.709 kb on + strand, within IAI46_22790at 4852.712 kb on + strand, within IAI46_22790at 4852.712 kb on + strand, within IAI46_22790at 4852.713 kb on - strand, within IAI46_22790at 4852.781 kb on + strand, within IAI46_22790at 4852.782 kb on - strand, within IAI46_22790at 4852.785 kb on + strand, within IAI46_22790at 4852.785 kb on + strand, within IAI46_22790at 4852.791 kb on - strand, within IAI46_22790at 4852.791 kb on - strand, within IAI46_22790at 4852.831 kb on + strand, within IAI46_22790at 4852.865 kb on + strand, within IAI46_22790at 4852.865 kb on + strand, within IAI46_22790at 4852.866 kb on - strand, within IAI46_22790at 4852.870 kb on - strand, within IAI46_22790at 4852.890 kb on - strand, within IAI46_22790at 4853.011 kb on + strand, within IAI46_22790at 4853.012 kb on - strand, within IAI46_22790at 4853.012 kb on - strand, within IAI46_22790at 4853.012 kb on - strand, within IAI46_22790at 4853.051 kb on + strand, within IAI46_22790at 4853.051 kb on + strand, within IAI46_22790at 4853.052 kb on - strand, within IAI46_22790at 4853.061 kb on + strand, within IAI46_22790at 4853.061 kb on + strand, within IAI46_22790at 4853.062 kb on - strand, within IAI46_22790at 4853.098 kb on - strand, within IAI46_22790at 4853.111 kb on + strand, within IAI46_22790at 4853.111 kb on + strand, within IAI46_22790at 4853.112 kb on - strand, within IAI46_22790at 4853.115 kb on + strand, within IAI46_22790at 4853.115 kb on + strand, within IAI46_22790at 4853.115 kb on + strand, within IAI46_22790

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,849,759 - IAI46_22775 0.46 +0.3
4,849,797 + IAI46_22775 0.50 +0.0
4,849,797 + IAI46_22775 0.50 +1.7
4,849,797 + IAI46_22775 0.50 +0.7
4,849,797 + IAI46_22775 0.50 +1.1
4,849,798 - IAI46_22775 0.50 +0.3
4,849,799 + IAI46_22775 0.50 +0.6
4,849,799 + IAI46_22775 0.50 +0.1
4,849,799 + IAI46_22775 0.50 -0.4
4,849,858 + IAI46_22775 0.57 +0.2
4,849,932 + IAI46_22775 0.64 +0.6
4,849,954 + IAI46_22775 0.66 -1.7
4,849,955 - IAI46_22775 0.67 -0.3
4,850,029 + IAI46_22775 0.74 -0.5
4,850,097 + IAI46_22775 0.81 +0.5
4,850,151 + IAI46_22775 0.87 -0.0
4,850,159 + IAI46_22775 0.88 +0.4
4,850,159 + IAI46_22775 0.88 +2.0
4,850,298 + -0.0
4,850,596 + +0.6
4,850,597 - -1.5
4,850,599 + +0.0
4,850,599 + +0.9
4,850,599 + +0.5
4,850,599 + -0.5
4,850,600 - -0.0
4,850,600 - -1.1
4,850,669 + +0.8
4,850,720 + +0.1
4,850,720 + +0.8
4,850,721 - -0.4
4,850,721 - +0.6
4,850,721 - +0.5
4,850,721 - +0.6
4,850,721 - -0.4
4,850,727 + +0.4
4,850,727 + +1.1
4,850,730 + -0.8
4,850,730 + -0.3
4,850,731 - +0.6
4,850,731 - -1.3
4,850,814 + -0.7
4,850,814 + +0.4
4,850,815 - +0.5
4,850,848 + +0.4
4,850,848 + +1.1
4,850,849 - +0.2
4,850,886 + IAI46_22785 0.11 +0.4
4,850,886 + IAI46_22785 0.11 -0.4
4,850,918 + IAI46_22785 0.14 +1.8
4,850,919 - IAI46_22785 0.14 -0.7
4,850,919 - IAI46_22785 0.14 +0.0
4,850,919 - IAI46_22785 0.14 +0.8
4,850,941 - IAI46_22785 0.15 +0.8
4,850,997 + IAI46_22785 0.19 +1.3
4,850,998 - IAI46_22785 0.19 -0.1
4,850,998 - IAI46_22785 0.19 +0.1
4,851,038 + IAI46_22785 0.22 +0.2
4,851,038 + IAI46_22785 0.22 +0.9
4,851,039 - IAI46_22785 0.22 -0.1
4,851,122 + IAI46_22785 0.28 -0.8
4,851,136 + IAI46_22785 0.29 -2.5
4,851,248 + IAI46_22785 0.37 -1.8
4,851,341 - IAI46_22785 0.44 -0.4
4,851,373 - IAI46_22785 0.46 -0.1
4,851,373 - IAI46_22785 0.46 +0.4
4,851,390 - IAI46_22785 0.47 -0.2
4,851,428 - IAI46_22785 0.50 -1.1
4,851,440 - IAI46_22785 0.51 +2.0
4,851,461 - IAI46_22785 0.52 -0.8
4,851,483 + IAI46_22785 0.54 +0.2
4,851,587 - IAI46_22785 0.61 +0.9
4,851,593 - IAI46_22785 0.62 -0.2
4,851,593 - IAI46_22785 0.62 +0.1
4,851,647 + IAI46_22785 0.66 -0.9
4,851,770 - IAI46_22785 0.74 +0.4
4,851,770 - IAI46_22785 0.74 +0.3
4,851,773 + IAI46_22785 0.75 +1.8
4,851,773 + IAI46_22785 0.75 +0.6
4,851,774 - IAI46_22785 0.75 -0.1
4,851,774 - IAI46_22785 0.75 -0.1
4,851,784 + IAI46_22785 0.75 +0.3
4,851,785 - IAI46_22785 0.76 -0.2
4,851,824 + IAI46_22785 0.78 -0.6
4,851,825 - IAI46_22785 0.78 +0.6
4,851,825 - IAI46_22785 0.78 +0.5
4,851,848 - IAI46_22785 0.80 -0.0
4,851,859 + IAI46_22785 0.81 -0.9
4,851,860 - IAI46_22785 0.81 +0.3
4,851,860 - IAI46_22785 0.81 -0.2
4,851,860 - IAI46_22785 0.81 +0.5
4,851,890 + IAI46_22785 0.83 -0.3
4,851,890 + IAI46_22785 0.83 +0.3
4,851,894 + IAI46_22785 0.83 -0.2
4,851,894 + IAI46_22785 0.83 +0.6
4,851,901 - IAI46_22785 0.84 -0.2
4,851,901 - IAI46_22785 0.84 -0.2
4,851,901 - IAI46_22785 0.84 +1.1
4,852,004 - +1.0
4,852,017 + +1.2
4,852,063 + +0.8
4,852,064 - -0.4
4,852,166 + -0.0
4,852,166 + +0.4
4,852,166 + +0.6
4,852,167 - -0.7
4,852,167 - -1.2
4,852,167 - +0.6
4,852,167 - -0.5
4,852,167 - -0.5
4,852,167 - +0.4
4,852,185 + +0.1
4,852,295 - +0.1
4,852,360 + -0.0
4,852,360 + +0.7
4,852,424 + -1.6
4,852,526 + IAI46_22790 0.15 +0.3
4,852,527 - IAI46_22790 0.15 -0.0
4,852,543 + IAI46_22790 0.16 -0.3
4,852,543 + IAI46_22790 0.16 +0.1
4,852,543 + IAI46_22790 0.16 +0.0
4,852,595 + IAI46_22790 0.20 +0.7
4,852,595 + IAI46_22790 0.20 +0.0
4,852,596 - IAI46_22790 0.20 +0.2
4,852,629 + IAI46_22790 0.23 +0.6
4,852,709 + IAI46_22790 0.29 -0.2
4,852,712 + IAI46_22790 0.29 +0.3
4,852,712 + IAI46_22790 0.29 +1.6
4,852,713 - IAI46_22790 0.29 +0.2
4,852,781 + IAI46_22790 0.34 -0.4
4,852,782 - IAI46_22790 0.34 +0.7
4,852,785 + IAI46_22790 0.34 +0.5
4,852,785 + IAI46_22790 0.34 -0.4
4,852,791 - IAI46_22790 0.35 +0.5
4,852,791 - IAI46_22790 0.35 +1.1
4,852,831 + IAI46_22790 0.38 +0.2
4,852,865 + IAI46_22790 0.40 +0.3
4,852,865 + IAI46_22790 0.40 +0.9
4,852,866 - IAI46_22790 0.40 -0.2
4,852,870 - IAI46_22790 0.41 +0.4
4,852,890 - IAI46_22790 0.42 -0.6
4,853,011 + IAI46_22790 0.51 -0.3
4,853,012 - IAI46_22790 0.51 +0.1
4,853,012 - IAI46_22790 0.51 -0.1
4,853,012 - IAI46_22790 0.51 +0.8
4,853,051 + IAI46_22790 0.54 +0.3
4,853,051 + IAI46_22790 0.54 +1.4
4,853,052 - IAI46_22790 0.54 +0.2
4,853,061 + IAI46_22790 0.55 +0.3
4,853,061 + IAI46_22790 0.55 -1.4
4,853,062 - IAI46_22790 0.55 -0.3
4,853,098 - IAI46_22790 0.58 -0.6
4,853,111 + IAI46_22790 0.59 +0.2
4,853,111 + IAI46_22790 0.59 +0.5
4,853,112 - IAI46_22790 0.59 +0.1
4,853,115 + IAI46_22790 0.59 +0.4
4,853,115 + IAI46_22790 0.59 +0.2
4,853,115 + IAI46_22790 0.59 -0.0

Or see this region's nucleotide sequence