Strain Fitness in Serratia liquefaciens MT49 around IAI46_21845

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21840 and IAI46_21845 are separated by 38 nucleotidesIAI46_21845 and IAI46_21850 are separated by 81 nucleotides IAI46_21840: IAI46_21840 - ribokinase, at 4,647,581 to 4,648,468 _21840 IAI46_21845: IAI46_21845 - nucleoside permease, at 4,648,507 to 4,649,766 _21845 IAI46_21850: IAI46_21850 - xanthosine phosphorylase, at 4,649,848 to 4,650,669 _21850 Position (kb) 4648 4649 4650Strain fitness (log2 ratio) -1 0 1at 4647.537 kb on + strandat 4647.600 kb on + strandat 4647.679 kb on + strand, within IAI46_21840at 4647.680 kb on - strand, within IAI46_21840at 4647.728 kb on - strand, within IAI46_21840at 4647.728 kb on - strand, within IAI46_21840at 4647.748 kb on - strand, within IAI46_21840at 4647.947 kb on + strand, within IAI46_21840at 4647.948 kb on - strand, within IAI46_21840at 4647.990 kb on + strand, within IAI46_21840at 4648.192 kb on + strand, within IAI46_21840at 4648.192 kb on + strand, within IAI46_21840at 4648.474 kb on - strandat 4648.522 kb on + strandat 4648.535 kb on + strandat 4648.535 kb on + strandat 4648.556 kb on + strandat 4648.557 kb on - strandat 4648.596 kb on + strandat 4648.596 kb on + strandat 4648.597 kb on - strandat 4648.597 kb on - strandat 4648.598 kb on + strandat 4648.723 kb on + strand, within IAI46_21845at 4648.723 kb on + strand, within IAI46_21845at 4648.789 kb on - strand, within IAI46_21845at 4648.815 kb on - strand, within IAI46_21845at 4648.934 kb on + strand, within IAI46_21845at 4649.012 kb on + strand, within IAI46_21845at 4649.023 kb on + strand, within IAI46_21845at 4649.024 kb on - strand, within IAI46_21845at 4649.036 kb on + strand, within IAI46_21845at 4649.036 kb on + strand, within IAI46_21845at 4649.036 kb on + strand, within IAI46_21845at 4649.037 kb on - strand, within IAI46_21845at 4649.139 kb on + strand, within IAI46_21845at 4649.243 kb on + strand, within IAI46_21845at 4649.280 kb on - strand, within IAI46_21845at 4649.280 kb on - strand, within IAI46_21845at 4649.289 kb on + strand, within IAI46_21845at 4649.289 kb on + strand, within IAI46_21845at 4649.289 kb on + strand, within IAI46_21845at 4649.289 kb on + strand, within IAI46_21845at 4649.289 kb on + strand, within IAI46_21845at 4649.290 kb on - strand, within IAI46_21845at 4649.337 kb on + strand, within IAI46_21845at 4649.354 kb on + strand, within IAI46_21845at 4649.354 kb on + strand, within IAI46_21845at 4649.354 kb on + strand, within IAI46_21845at 4649.356 kb on + strand, within IAI46_21845at 4649.357 kb on - strand, within IAI46_21845at 4649.448 kb on + strand, within IAI46_21845at 4649.448 kb on + strand, within IAI46_21845at 4649.448 kb on + strand, within IAI46_21845at 4649.449 kb on - strand, within IAI46_21845at 4649.449 kb on - strand, within IAI46_21845at 4649.449 kb on - strand, within IAI46_21845at 4649.449 kb on - strand, within IAI46_21845at 4649.449 kb on - strand, within IAI46_21845at 4649.449 kb on - strand, within IAI46_21845at 4649.450 kb on + strand, within IAI46_21845at 4649.450 kb on + strand, within IAI46_21845at 4649.450 kb on + strand, within IAI46_21845at 4649.450 kb on + strand, within IAI46_21845at 4649.450 kb on + strand, within IAI46_21845at 4649.450 kb on + strand, within IAI46_21845at 4649.451 kb on - strand, within IAI46_21845at 4649.451 kb on - strand, within IAI46_21845at 4649.451 kb on - strand, within IAI46_21845at 4649.451 kb on - strand, within IAI46_21845at 4649.516 kb on + strand, within IAI46_21845at 4649.517 kb on - strand, within IAI46_21845at 4649.552 kb on + strand, within IAI46_21845at 4649.558 kb on + strand, within IAI46_21845at 4649.559 kb on - strand, within IAI46_21845at 4649.607 kb on + strand, within IAI46_21845at 4649.637 kb on - strand, within IAI46_21845at 4649.676 kb on + strandat 4649.676 kb on + strandat 4649.685 kb on - strandat 4649.778 kb on + strandat 4649.781 kb on + strandat 4649.883 kb on + strandat 4649.960 kb on + strand, within IAI46_21850at 4649.987 kb on - strand, within IAI46_21850at 4649.987 kb on - strand, within IAI46_21850at 4649.987 kb on - strand, within IAI46_21850at 4650.107 kb on + strand, within IAI46_21850at 4650.107 kb on + strand, within IAI46_21850at 4650.138 kb on + strand, within IAI46_21850at 4650.138 kb on + strand, within IAI46_21850at 4650.188 kb on + strand, within IAI46_21850at 4650.188 kb on + strand, within IAI46_21850at 4650.235 kb on - strand, within IAI46_21850at 4650.261 kb on + strand, within IAI46_21850at 4650.261 kb on + strand, within IAI46_21850at 4650.261 kb on + strand, within IAI46_21850at 4650.373 kb on - strand, within IAI46_21850at 4650.373 kb on - strand, within IAI46_21850at 4650.373 kb on - strand, within IAI46_21850at 4650.376 kb on + strand, within IAI46_21850at 4650.376 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.413 kb on + strand, within IAI46_21850at 4650.414 kb on - strand, within IAI46_21850at 4650.414 kb on - strand, within IAI46_21850at 4650.416 kb on + strand, within IAI46_21850at 4650.670 kb on - strandat 4650.670 kb on - strandat 4650.698 kb on - strandat 4650.706 kb on + strandat 4650.707 kb on - strandat 4650.709 kb on + strandat 4650.709 kb on + strandat 4650.710 kb on - strandat 4650.736 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,647,537 + -0.2
4,647,600 + +0.3
4,647,679 + IAI46_21840 0.11 +0.1
4,647,680 - IAI46_21840 0.11 +0.3
4,647,728 - IAI46_21840 0.17 +0.1
4,647,728 - IAI46_21840 0.17 -0.0
4,647,748 - IAI46_21840 0.19 +1.1
4,647,947 + IAI46_21840 0.41 +0.8
4,647,948 - IAI46_21840 0.41 -1.3
4,647,990 + IAI46_21840 0.46 -0.1
4,648,192 + IAI46_21840 0.69 -0.3
4,648,192 + IAI46_21840 0.69 -0.1
4,648,474 - +0.7
4,648,522 + -0.3
4,648,535 + -0.7
4,648,535 + -0.8
4,648,556 + -0.1
4,648,557 - +0.4
4,648,596 + +0.3
4,648,596 + +0.3
4,648,597 - -0.4
4,648,597 - -0.5
4,648,598 + +0.7
4,648,723 + IAI46_21845 0.17 -0.2
4,648,723 + IAI46_21845 0.17 +0.3
4,648,789 - IAI46_21845 0.22 +0.3
4,648,815 - IAI46_21845 0.24 -0.0
4,648,934 + IAI46_21845 0.34 -1.0
4,649,012 + IAI46_21845 0.40 +0.7
4,649,023 + IAI46_21845 0.41 -0.1
4,649,024 - IAI46_21845 0.41 -0.1
4,649,036 + IAI46_21845 0.42 -0.4
4,649,036 + IAI46_21845 0.42 -0.7
4,649,036 + IAI46_21845 0.42 -0.6
4,649,037 - IAI46_21845 0.42 -0.5
4,649,139 + IAI46_21845 0.50 +0.4
4,649,243 + IAI46_21845 0.58 -0.4
4,649,280 - IAI46_21845 0.61 -0.7
4,649,280 - IAI46_21845 0.61 -0.1
4,649,289 + IAI46_21845 0.62 -0.5
4,649,289 + IAI46_21845 0.62 +0.6
4,649,289 + IAI46_21845 0.62 +0.5
4,649,289 + IAI46_21845 0.62 +0.2
4,649,289 + IAI46_21845 0.62 +1.6
4,649,290 - IAI46_21845 0.62 +1.0
4,649,337 + IAI46_21845 0.66 +0.4
4,649,354 + IAI46_21845 0.67 -0.9
4,649,354 + IAI46_21845 0.67 +0.0
4,649,354 + IAI46_21845 0.67 +0.7
4,649,356 + IAI46_21845 0.67 +0.3
4,649,357 - IAI46_21845 0.67 -0.6
4,649,448 + IAI46_21845 0.75 +0.1
4,649,448 + IAI46_21845 0.75 +0.3
4,649,448 + IAI46_21845 0.75 +0.4
4,649,449 - IAI46_21845 0.75 -1.0
4,649,449 - IAI46_21845 0.75 +1.0
4,649,449 - IAI46_21845 0.75 -0.2
4,649,449 - IAI46_21845 0.75 +1.1
4,649,449 - IAI46_21845 0.75 +0.5
4,649,449 - IAI46_21845 0.75 +0.5
4,649,450 + IAI46_21845 0.75 +1.4
4,649,450 + IAI46_21845 0.75 -0.9
4,649,450 + IAI46_21845 0.75 -1.1
4,649,450 + IAI46_21845 0.75 -0.3
4,649,450 + IAI46_21845 0.75 +0.2
4,649,450 + IAI46_21845 0.75 +1.7
4,649,451 - IAI46_21845 0.75 +0.7
4,649,451 - IAI46_21845 0.75 +0.0
4,649,451 - IAI46_21845 0.75 +0.4
4,649,451 - IAI46_21845 0.75 +0.3
4,649,516 + IAI46_21845 0.80 +1.6
4,649,517 - IAI46_21845 0.80 -0.3
4,649,552 + IAI46_21845 0.83 -0.1
4,649,558 + IAI46_21845 0.83 +0.9
4,649,559 - IAI46_21845 0.83 -0.9
4,649,607 + IAI46_21845 0.87 +0.8
4,649,637 - IAI46_21845 0.90 +1.3
4,649,676 + +0.8
4,649,676 + +0.7
4,649,685 - -1.2
4,649,778 + +0.6
4,649,781 + -0.2
4,649,883 + +0.6
4,649,960 + IAI46_21850 0.14 -0.2
4,649,987 - IAI46_21850 0.17 +0.1
4,649,987 - IAI46_21850 0.17 +0.4
4,649,987 - IAI46_21850 0.17 -0.1
4,650,107 + IAI46_21850 0.32 +0.2
4,650,107 + IAI46_21850 0.32 -0.3
4,650,138 + IAI46_21850 0.35 +0.2
4,650,138 + IAI46_21850 0.35 +0.2
4,650,188 + IAI46_21850 0.41 +0.6
4,650,188 + IAI46_21850 0.41 +1.1
4,650,235 - IAI46_21850 0.47 +1.5
4,650,261 + IAI46_21850 0.50 -0.7
4,650,261 + IAI46_21850 0.50 -0.3
4,650,261 + IAI46_21850 0.50 +0.6
4,650,373 - IAI46_21850 0.64 +0.3
4,650,373 - IAI46_21850 0.64 +0.8
4,650,373 - IAI46_21850 0.64 -0.5
4,650,376 + IAI46_21850 0.64 +0.8
4,650,376 + IAI46_21850 0.64 +0.0
4,650,413 + IAI46_21850 0.69 -0.2
4,650,413 + IAI46_21850 0.69 -0.7
4,650,413 + IAI46_21850 0.69 -0.4
4,650,413 + IAI46_21850 0.69 +0.5
4,650,413 + IAI46_21850 0.69 +0.7
4,650,413 + IAI46_21850 0.69 -0.6
4,650,413 + IAI46_21850 0.69 +0.1
4,650,413 + IAI46_21850 0.69 +0.1
4,650,414 - IAI46_21850 0.69 +0.0
4,650,414 - IAI46_21850 0.69 -0.4
4,650,416 + IAI46_21850 0.69 +0.2
4,650,670 - +0.6
4,650,670 - +0.6
4,650,698 - +1.0
4,650,706 + +0.4
4,650,707 - -0.1
4,650,709 + +0.0
4,650,709 + +0.6
4,650,710 - +1.1
4,650,736 + -0.0

Or see this region's nucleotide sequence