Strain Fitness in Serratia liquefaciens MT49 around IAI46_21675

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_21670 and IAI46_21675 are separated by 580 nucleotidesIAI46_21675 and IAI46_21680 are separated by 230 nucleotides IAI46_21670: IAI46_21670 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 4,606,491 to 4,608,206 _21670 IAI46_21675: IAI46_21675 - aminoimidazole riboside kinase, at 4,608,787 to 4,609,716 _21675 IAI46_21680: IAI46_21680 - carbohydrate porin, at 4,609,947 to 4,611,356 _21680 Position (kb) 4608 4609 4610Strain fitness (log2 ratio) -1 0 1 2at 4607.787 kb on - strand, within IAI46_21670at 4607.787 kb on - strand, within IAI46_21670at 4607.794 kb on + strand, within IAI46_21670at 4607.825 kb on + strand, within IAI46_21670at 4607.826 kb on - strand, within IAI46_21670at 4607.978 kb on + strand, within IAI46_21670at 4607.978 kb on + strand, within IAI46_21670at 4607.979 kb on - strand, within IAI46_21670at 4608.070 kb on - strandat 4608.070 kb on - strandat 4608.070 kb on - strandat 4608.070 kb on - strandat 4608.122 kb on + strandat 4608.126 kb on + strandat 4608.127 kb on - strandat 4608.156 kb on - strandat 4608.191 kb on - strandat 4608.191 kb on - strandat 4608.208 kb on - strandat 4608.233 kb on - strandat 4608.233 kb on - strandat 4608.265 kb on + strandat 4608.265 kb on + strandat 4608.266 kb on - strandat 4608.277 kb on + strandat 4608.278 kb on - strandat 4608.278 kb on - strandat 4608.321 kb on - strandat 4608.336 kb on - strandat 4608.416 kb on - strandat 4608.419 kb on + strandat 4608.548 kb on - strandat 4608.559 kb on + strandat 4608.559 kb on + strandat 4608.632 kb on + strandat 4608.633 kb on - strandat 4608.647 kb on + strandat 4608.647 kb on + strandat 4608.647 kb on + strandat 4608.670 kb on + strandat 4608.671 kb on - strandat 4608.671 kb on - strandat 4608.800 kb on + strandat 4608.857 kb on + strandat 4608.858 kb on + strandat 4608.858 kb on + strandat 4608.858 kb on + strandat 4608.858 kb on + strandat 4608.859 kb on - strandat 4609.005 kb on + strand, within IAI46_21675at 4609.005 kb on + strand, within IAI46_21675at 4609.006 kb on - strand, within IAI46_21675at 4609.168 kb on - strand, within IAI46_21675at 4609.374 kb on + strand, within IAI46_21675at 4609.460 kb on + strand, within IAI46_21675at 4609.460 kb on + strand, within IAI46_21675at 4609.461 kb on - strand, within IAI46_21675at 4609.466 kb on + strand, within IAI46_21675at 4609.466 kb on + strand, within IAI46_21675at 4609.467 kb on - strand, within IAI46_21675at 4609.467 kb on - strand, within IAI46_21675at 4609.525 kb on - strand, within IAI46_21675at 4609.756 kb on + strandat 4609.768 kb on - strandat 4609.825 kb on - strandat 4609.839 kb on - strandat 4609.920 kb on - strandat 4609.963 kb on - strandat 4609.963 kb on - strandat 4609.963 kb on - strandat 4610.144 kb on + strand, within IAI46_21680at 4610.243 kb on - strand, within IAI46_21680at 4610.383 kb on + strand, within IAI46_21680at 4610.383 kb on + strand, within IAI46_21680at 4610.384 kb on - strand, within IAI46_21680at 4610.384 kb on - strand, within IAI46_21680at 4610.547 kb on + strand, within IAI46_21680at 4610.547 kb on + strand, within IAI46_21680at 4610.548 kb on - strand, within IAI46_21680at 4610.548 kb on - strand, within IAI46_21680at 4610.548 kb on - strand, within IAI46_21680at 4610.613 kb on + strand, within IAI46_21680at 4610.614 kb on - strand, within IAI46_21680at 4610.631 kb on + strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.634 kb on - strand, within IAI46_21680at 4610.634 kb on - strand, within IAI46_21680at 4610.634 kb on - strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.638 kb on - strand, within IAI46_21680at 4610.638 kb on - strand, within IAI46_21680at 4610.663 kb on + strand, within IAI46_21680at 4610.663 kb on + strand, within IAI46_21680at 4610.664 kb on - strand, within IAI46_21680at 4610.712 kb on + strand, within IAI46_21680at 4610.713 kb on - strand, within IAI46_21680

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
4,607,787 - IAI46_21670 0.76 +0.3
4,607,787 - IAI46_21670 0.76 -0.3
4,607,794 + IAI46_21670 0.76 +0.3
4,607,825 + IAI46_21670 0.78 -0.3
4,607,826 - IAI46_21670 0.78 +0.2
4,607,978 + IAI46_21670 0.87 +0.3
4,607,978 + IAI46_21670 0.87 -0.3
4,607,979 - IAI46_21670 0.87 -0.6
4,608,070 - +1.5
4,608,070 - +0.4
4,608,070 - -1.0
4,608,070 - +0.3
4,608,122 + -0.8
4,608,126 + +0.8
4,608,127 - -1.0
4,608,156 - +0.9
4,608,191 - -0.1
4,608,191 - +0.9
4,608,208 - -0.5
4,608,233 - +0.4
4,608,233 - +0.4
4,608,265 + +0.3
4,608,265 + -0.7
4,608,266 - +0.6
4,608,277 + +0.6
4,608,278 - +1.0
4,608,278 - -0.2
4,608,321 - -0.3
4,608,336 - +0.1
4,608,416 - -1.0
4,608,419 + -0.3
4,608,548 - +0.7
4,608,559 + -0.3
4,608,559 + -0.3
4,608,632 + +0.4
4,608,633 - +0.7
4,608,647 + +0.7
4,608,647 + +0.1
4,608,647 + -1.2
4,608,670 + +0.3
4,608,671 - -0.2
4,608,671 - +0.2
4,608,800 + +0.2
4,608,857 + +0.3
4,608,858 + +1.6
4,608,858 + -0.1
4,608,858 + +0.5
4,608,858 + +0.2
4,608,859 - +0.3
4,609,005 + IAI46_21675 0.23 -0.0
4,609,005 + IAI46_21675 0.23 +1.8
4,609,006 - IAI46_21675 0.24 +0.5
4,609,168 - IAI46_21675 0.41 -0.4
4,609,374 + IAI46_21675 0.63 +2.5
4,609,460 + IAI46_21675 0.72 +0.1
4,609,460 + IAI46_21675 0.72 -0.2
4,609,461 - IAI46_21675 0.72 -0.1
4,609,466 + IAI46_21675 0.73 +0.5
4,609,466 + IAI46_21675 0.73 +0.7
4,609,467 - IAI46_21675 0.73 +0.7
4,609,467 - IAI46_21675 0.73 -0.5
4,609,525 - IAI46_21675 0.79 +0.2
4,609,756 + +0.5
4,609,768 - -0.3
4,609,825 - -0.2
4,609,839 - -0.3
4,609,920 - -0.8
4,609,963 - -0.7
4,609,963 - -0.5
4,609,963 - +1.4
4,610,144 + IAI46_21680 0.14 -0.1
4,610,243 - IAI46_21680 0.21 +0.2
4,610,383 + IAI46_21680 0.31 -0.3
4,610,383 + IAI46_21680 0.31 +0.0
4,610,384 - IAI46_21680 0.31 +0.9
4,610,384 - IAI46_21680 0.31 +1.3
4,610,547 + IAI46_21680 0.43 +0.1
4,610,547 + IAI46_21680 0.43 -0.1
4,610,548 - IAI46_21680 0.43 +0.8
4,610,548 - IAI46_21680 0.43 -0.3
4,610,548 - IAI46_21680 0.43 +0.8
4,610,613 + IAI46_21680 0.47 +0.7
4,610,614 - IAI46_21680 0.47 -0.1
4,610,631 + IAI46_21680 0.49 -0.7
4,610,632 - IAI46_21680 0.49 +0.4
4,610,632 - IAI46_21680 0.49 +0.8
4,610,632 - IAI46_21680 0.49 +0.7
4,610,632 - IAI46_21680 0.49 +0.2
4,610,633 + IAI46_21680 0.49 -1.3
4,610,633 + IAI46_21680 0.49 -0.6
4,610,633 + IAI46_21680 0.49 -1.1
4,610,633 + IAI46_21680 0.49 -1.0
4,610,633 + IAI46_21680 0.49 +0.1
4,610,633 + IAI46_21680 0.49 +0.7
4,610,634 - IAI46_21680 0.49 -0.3
4,610,634 - IAI46_21680 0.49 +0.3
4,610,634 - IAI46_21680 0.49 +0.4
4,610,637 + IAI46_21680 0.49 -0.2
4,610,637 + IAI46_21680 0.49 +0.1
4,610,637 + IAI46_21680 0.49 +0.8
4,610,637 + IAI46_21680 0.49 -1.4
4,610,638 - IAI46_21680 0.49 -0.4
4,610,638 - IAI46_21680 0.49 +0.7
4,610,663 + IAI46_21680 0.51 +1.0
4,610,663 + IAI46_21680 0.51 +0.2
4,610,664 - IAI46_21680 0.51 +0.9
4,610,712 + IAI46_21680 0.54 +0.5
4,610,713 - IAI46_21680 0.54 -0.7

Or see this region's nucleotide sequence