Strain Fitness in Serratia liquefaciens MT49 around IAI46_20330

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20320 and IAI46_20325 are separated by 171 nucleotidesIAI46_20325 and IAI46_20330 are separated by 30 nucleotidesIAI46_20330 and IAI46_20335 overlap by 8 nucleotidesIAI46_20335 and IAI46_20340 are separated by 52 nucleotides IAI46_20320: IAI46_20320 - LOG family protein, at 4,294,141 to 4,295,505 _20320 IAI46_20325: IAI46_20325 - flap endonuclease Xni, at 4,295,677 to 4,296,432 _20325 IAI46_20330: IAI46_20330 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 4,296,463 to 4,297,566 _20330 IAI46_20335: IAI46_20335 - DUF423 domain-containing protein, at 4,297,559 to 4,297,954 _20335 IAI46_20340: IAI46_20340 - transcriptional regulator GcvA, at 4,298,007 to 4,298,924 _20340 Position (kb) 4296 4297 4298Strain fitness (log2 ratio) -2 -1 0 1 2at 4295.476 kb on + strandat 4295.477 kb on - strandat 4295.477 kb on - strandat 4295.495 kb on + strandat 4295.495 kb on + strandat 4295.526 kb on - strandat 4295.529 kb on - strandat 4295.564 kb on - strandat 4295.568 kb on + strandat 4295.569 kb on - strandat 4295.569 kb on - strandat 4295.569 kb on - strandat 4295.571 kb on - strandat 4295.598 kb on - strandat 4295.620 kb on + strandat 4295.620 kb on + strandat 4295.620 kb on + strandat 4295.635 kb on - strandat 4295.635 kb on - strandat 4295.675 kb on + strandat 4295.676 kb on - strandat 4295.682 kb on + strandat 4295.682 kb on + strandat 4295.683 kb on - strandat 4295.683 kb on - strandat 4295.683 kb on - strandat 4295.684 kb on + strandat 4295.684 kb on + strandat 4295.684 kb on + strandat 4295.684 kb on + strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.685 kb on - strandat 4295.690 kb on + strandat 4295.690 kb on + strandat 4295.691 kb on - strandat 4295.872 kb on + strand, within IAI46_20325at 4295.872 kb on + strand, within IAI46_20325at 4295.873 kb on - strand, within IAI46_20325at 4295.874 kb on + strand, within IAI46_20325at 4295.875 kb on - strand, within IAI46_20325at 4296.042 kb on + strand, within IAI46_20325at 4296.179 kb on - strand, within IAI46_20325at 4296.201 kb on + strand, within IAI46_20325at 4296.201 kb on + strand, within IAI46_20325at 4296.201 kb on + strand, within IAI46_20325at 4296.286 kb on + strand, within IAI46_20325at 4296.287 kb on - strand, within IAI46_20325at 4296.287 kb on - strand, within IAI46_20325at 4296.352 kb on + strand, within IAI46_20325at 4296.352 kb on + strand, within IAI46_20325at 4296.352 kb on + strand, within IAI46_20325at 4296.352 kb on + strand, within IAI46_20325at 4296.352 kb on + strand, within IAI46_20325at 4296.353 kb on - strand, within IAI46_20325at 4296.353 kb on - strand, within IAI46_20325at 4296.353 kb on - strand, within IAI46_20325at 4296.353 kb on - strand, within IAI46_20325at 4296.353 kb on - strand, within IAI46_20325at 4296.354 kb on + strand, within IAI46_20325at 4296.354 kb on + strand, within IAI46_20325at 4296.355 kb on - strand, within IAI46_20325at 4296.355 kb on - strand, within IAI46_20325at 4296.464 kb on + strandat 4296.574 kb on - strand, within IAI46_20330at 4296.776 kb on + strand, within IAI46_20330at 4296.777 kb on - strand, within IAI46_20330at 4296.777 kb on - strand, within IAI46_20330at 4296.805 kb on + strand, within IAI46_20330at 4296.888 kb on - strand, within IAI46_20330at 4297.002 kb on + strand, within IAI46_20330at 4297.003 kb on - strand, within IAI46_20330at 4297.003 kb on - strand, within IAI46_20330at 4297.003 kb on - strand, within IAI46_20330at 4297.051 kb on - strand, within IAI46_20330at 4297.052 kb on + strand, within IAI46_20330at 4297.052 kb on + strand, within IAI46_20330at 4297.053 kb on - strand, within IAI46_20330at 4297.053 kb on - strand, within IAI46_20330at 4297.083 kb on - strand, within IAI46_20330at 4297.091 kb on + strand, within IAI46_20330at 4297.092 kb on - strand, within IAI46_20330at 4297.092 kb on - strand, within IAI46_20330at 4297.092 kb on - strand, within IAI46_20330at 4297.252 kb on + strand, within IAI46_20330at 4297.427 kb on + strand, within IAI46_20330at 4297.445 kb on + strand, within IAI46_20330at 4297.446 kb on - strand, within IAI46_20330at 4297.561 kb on - strandat 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.657 kb on - strand, within IAI46_20335at 4297.712 kb on + strand, within IAI46_20335at 4297.712 kb on + strand, within IAI46_20335at 4297.713 kb on - strand, within IAI46_20335at 4297.746 kb on + strand, within IAI46_20335at 4297.747 kb on - strand, within IAI46_20335at 4297.871 kb on + strand, within IAI46_20335at 4297.872 kb on - strand, within IAI46_20335at 4297.872 kb on - strand, within IAI46_20335at 4297.874 kb on + strand, within IAI46_20335at 4297.874 kb on + strand, within IAI46_20335at 4297.875 kb on - strand, within IAI46_20335at 4297.907 kb on + strand, within IAI46_20335at 4297.907 kb on + strand, within IAI46_20335at 4297.959 kb on - strandat 4297.959 kb on - strandat 4297.962 kb on + strandat 4297.963 kb on - strandat 4297.963 kb on - strandat 4297.963 kb on - strandat 4298.082 kb on + strandat 4298.116 kb on - strand, within IAI46_20340at 4298.116 kb on - strand, within IAI46_20340at 4298.116 kb on - strand, within IAI46_20340at 4298.205 kb on - strand, within IAI46_20340at 4298.283 kb on + strand, within IAI46_20340at 4298.284 kb on - strand, within IAI46_20340at 4298.318 kb on - strand, within IAI46_20340at 4298.342 kb on + strand, within IAI46_20340at 4298.435 kb on - strand, within IAI46_20340at 4298.446 kb on - strand, within IAI46_20340

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,295,476 + -0.1
4,295,477 - -0.7
4,295,477 - +0.4
4,295,495 + +0.8
4,295,495 + +0.1
4,295,526 - -1.0
4,295,529 - -0.8
4,295,564 - +1.4
4,295,568 + -1.3
4,295,569 - +0.4
4,295,569 - -0.3
4,295,569 - -0.3
4,295,571 - +1.2
4,295,598 - +1.1
4,295,620 + -0.8
4,295,620 + -0.6
4,295,620 + +0.4
4,295,635 - -0.2
4,295,635 - +0.5
4,295,675 + +0.2
4,295,676 - +0.3
4,295,682 + -0.5
4,295,682 + -0.2
4,295,683 - -0.1
4,295,683 - +0.8
4,295,683 - +0.3
4,295,684 + +0.8
4,295,684 + +2.6
4,295,684 + +0.6
4,295,684 + +0.3
4,295,685 - +0.8
4,295,685 - -1.1
4,295,685 - -1.3
4,295,685 - +0.1
4,295,685 - +0.0
4,295,685 - +0.0
4,295,685 - -0.2
4,295,685 - -1.6
4,295,690 + +1.1
4,295,690 + +0.3
4,295,691 - -0.0
4,295,872 + IAI46_20325 0.26 -0.6
4,295,872 + IAI46_20325 0.26 +1.0
4,295,873 - IAI46_20325 0.26 +0.7
4,295,874 + IAI46_20325 0.26 +0.3
4,295,875 - IAI46_20325 0.26 -0.7
4,296,042 + IAI46_20325 0.48 -1.2
4,296,179 - IAI46_20325 0.66 +1.4
4,296,201 + IAI46_20325 0.69 -0.3
4,296,201 + IAI46_20325 0.69 -0.3
4,296,201 + IAI46_20325 0.69 +0.3
4,296,286 + IAI46_20325 0.81 +0.7
4,296,287 - IAI46_20325 0.81 -0.4
4,296,287 - IAI46_20325 0.81 -0.1
4,296,352 + IAI46_20325 0.89 +0.4
4,296,352 + IAI46_20325 0.89 -0.6
4,296,352 + IAI46_20325 0.89 +0.6
4,296,352 + IAI46_20325 0.89 +0.1
4,296,352 + IAI46_20325 0.89 +0.3
4,296,353 - IAI46_20325 0.89 +0.9
4,296,353 - IAI46_20325 0.89 +0.4
4,296,353 - IAI46_20325 0.89 -0.2
4,296,353 - IAI46_20325 0.89 +0.8
4,296,353 - IAI46_20325 0.89 -1.2
4,296,354 + IAI46_20325 0.90 +0.2
4,296,354 + IAI46_20325 0.90 +0.4
4,296,355 - IAI46_20325 0.90 +1.2
4,296,355 - IAI46_20325 0.90 +0.4
4,296,464 + +0.0
4,296,574 - IAI46_20330 0.10 -0.3
4,296,776 + IAI46_20330 0.28 +1.0
4,296,777 - IAI46_20330 0.28 -0.1
4,296,777 - IAI46_20330 0.28 -0.0
4,296,805 + IAI46_20330 0.31 +0.1
4,296,888 - IAI46_20330 0.38 -0.7
4,297,002 + IAI46_20330 0.49 +0.8
4,297,003 - IAI46_20330 0.49 -2.7
4,297,003 - IAI46_20330 0.49 +0.8
4,297,003 - IAI46_20330 0.49 +0.2
4,297,051 - IAI46_20330 0.53 +0.4
4,297,052 + IAI46_20330 0.53 +0.2
4,297,052 + IAI46_20330 0.53 +0.5
4,297,053 - IAI46_20330 0.53 +0.4
4,297,053 - IAI46_20330 0.53 +0.2
4,297,083 - IAI46_20330 0.56 +0.1
4,297,091 + IAI46_20330 0.57 -0.1
4,297,092 - IAI46_20330 0.57 -0.6
4,297,092 - IAI46_20330 0.57 -0.1
4,297,092 - IAI46_20330 0.57 +1.4
4,297,252 + IAI46_20330 0.71 +0.6
4,297,427 + IAI46_20330 0.87 +0.2
4,297,445 + IAI46_20330 0.89 +1.2
4,297,446 - IAI46_20330 0.89 -0.4
4,297,561 - -0.2
4,297,656 + IAI46_20335 0.24 +0.6
4,297,656 + IAI46_20335 0.24 +0.1
4,297,656 + IAI46_20335 0.24 -0.6
4,297,656 + IAI46_20335 0.24 +0.2
4,297,656 + IAI46_20335 0.24 -0.0
4,297,657 - IAI46_20335 0.25 +0.6
4,297,712 + IAI46_20335 0.39 -0.1
4,297,712 + IAI46_20335 0.39 +0.2
4,297,713 - IAI46_20335 0.39 +0.1
4,297,746 + IAI46_20335 0.47 +0.4
4,297,747 - IAI46_20335 0.47 +0.6
4,297,871 + IAI46_20335 0.79 +0.2
4,297,872 - IAI46_20335 0.79 -0.2
4,297,872 - IAI46_20335 0.79 +1.1
4,297,874 + IAI46_20335 0.80 +0.3
4,297,874 + IAI46_20335 0.80 +0.3
4,297,875 - IAI46_20335 0.80 -0.2
4,297,907 + IAI46_20335 0.88 +0.3
4,297,907 + IAI46_20335 0.88 +0.4
4,297,959 - -0.1
4,297,959 - +1.0
4,297,962 + -0.0
4,297,963 - +0.4
4,297,963 - +0.4
4,297,963 - -0.3
4,298,082 + +0.2
4,298,116 - IAI46_20340 0.12 +0.3
4,298,116 - IAI46_20340 0.12 -0.7
4,298,116 - IAI46_20340 0.12 +0.3
4,298,205 - IAI46_20340 0.22 +0.5
4,298,283 + IAI46_20340 0.30 +0.9
4,298,284 - IAI46_20340 0.30 +0.5
4,298,318 - IAI46_20340 0.34 +0.8
4,298,342 + IAI46_20340 0.36 +0.7
4,298,435 - IAI46_20340 0.47 +0.0
4,298,446 - IAI46_20340 0.48 -0.5

Or see this region's nucleotide sequence