Strain Fitness in Serratia liquefaciens MT49 around IAI46_19675

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19670 and IAI46_19675 overlap by 4 nucleotidesIAI46_19675 and IAI46_19680 are separated by 273 nucleotidesIAI46_19680 and IAI46_19685 overlap by 4 nucleotides IAI46_19670: IAI46_19670 - ATP-binding domain-containing protein, at 4,154,098 to 4,156,179 _19670 IAI46_19675: IAI46_19675 - DUF2290 domain-containing protein, at 4,156,176 to 4,156,847 _19675 IAI46_19680: IAI46_19680 - ogr/Delta-like zinc finger family protein, at 4,157,121 to 4,157,375 _19680 IAI46_19685: IAI46_19685 - NAD-dependent aldehyde dehydrogenase, at 4,157,372 to 4,158,097 _19685 Position (kb) 4156 4157Strain fitness (log2 ratio) -2 -1 0 1at 4155.321 kb on + strand, within IAI46_19670at 4155.353 kb on + strand, within IAI46_19670at 4155.354 kb on - strand, within IAI46_19670at 4155.354 kb on - strand, within IAI46_19670at 4155.367 kb on - strand, within IAI46_19670at 4155.381 kb on - strand, within IAI46_19670at 4155.437 kb on - strand, within IAI46_19670at 4155.484 kb on - strand, within IAI46_19670at 4155.535 kb on - strand, within IAI46_19670at 4155.732 kb on - strand, within IAI46_19670at 4155.838 kb on + strand, within IAI46_19670at 4155.838 kb on + strand, within IAI46_19670at 4155.840 kb on + strand, within IAI46_19670at 4155.866 kb on - strand, within IAI46_19670at 4155.866 kb on - strand, within IAI46_19670at 4155.943 kb on - strand, within IAI46_19670at 4155.945 kb on - strand, within IAI46_19670at 4155.945 kb on - strand, within IAI46_19670at 4155.945 kb on - strand, within IAI46_19670at 4155.965 kb on + strand, within IAI46_19670at 4156.003 kb on + strandat 4156.004 kb on - strandat 4156.084 kb on + strandat 4156.084 kb on + strandat 4156.085 kb on - strandat 4156.087 kb on - strandat 4156.152 kb on - strandat 4156.195 kb on + strandat 4156.257 kb on - strand, within IAI46_19675at 4156.351 kb on - strand, within IAI46_19675at 4156.410 kb on - strand, within IAI46_19675at 4156.411 kb on + strand, within IAI46_19675at 4156.518 kb on + strand, within IAI46_19675at 4156.536 kb on - strand, within IAI46_19675at 4156.568 kb on + strand, within IAI46_19675at 4156.604 kb on + strand, within IAI46_19675at 4156.604 kb on + strand, within IAI46_19675at 4156.604 kb on + strand, within IAI46_19675at 4156.605 kb on - strand, within IAI46_19675at 4156.605 kb on - strand, within IAI46_19675at 4156.618 kb on - strand, within IAI46_19675at 4156.670 kb on - strand, within IAI46_19675at 4156.670 kb on - strand, within IAI46_19675at 4156.697 kb on + strand, within IAI46_19675at 4156.751 kb on + strand, within IAI46_19675at 4156.819 kb on - strandat 4156.826 kb on + strandat 4156.834 kb on + strandat 4156.834 kb on + strandat 4156.834 kb on + strandat 4156.835 kb on - strandat 4156.836 kb on + strandat 4156.836 kb on + strandat 4156.837 kb on - strandat 4156.837 kb on - strandat 4156.837 kb on - strandat 4156.837 kb on - strandat 4156.837 kb on - strandat 4156.840 kb on + strandat 4156.840 kb on + strandat 4156.841 kb on - strandat 4156.845 kb on + strandat 4156.845 kb on + strandat 4156.846 kb on - strandat 4156.851 kb on + strandat 4156.851 kb on + strandat 4156.851 kb on + strandat 4156.851 kb on + strandat 4156.852 kb on - strandat 4156.856 kb on + strandat 4156.856 kb on + strandat 4156.856 kb on + strandat 4156.878 kb on + strandat 4156.879 kb on - strandat 4157.077 kb on - strandat 4157.144 kb on + strandat 4157.145 kb on - strandat 4157.147 kb on - strand, within IAI46_19680at 4157.147 kb on - strand, within IAI46_19680at 4157.164 kb on - strand, within IAI46_19680at 4157.188 kb on - strand, within IAI46_19680at 4157.218 kb on - strand, within IAI46_19680at 4157.218 kb on - strand, within IAI46_19680at 4157.230 kb on - strand, within IAI46_19680at 4157.258 kb on + strand, within IAI46_19680at 4157.293 kb on + strand, within IAI46_19680at 4157.296 kb on + strand, within IAI46_19680at 4157.297 kb on - strand, within IAI46_19680at 4157.339 kb on + strand, within IAI46_19680at 4157.341 kb on + strand, within IAI46_19680at 4157.472 kb on - strand, within IAI46_19685at 4157.541 kb on - strand, within IAI46_19685at 4157.541 kb on - strand, within IAI46_19685at 4157.554 kb on + strand, within IAI46_19685at 4157.564 kb on + strand, within IAI46_19685at 4157.564 kb on + strand, within IAI46_19685at 4157.565 kb on - strand, within IAI46_19685at 4157.576 kb on + strand, within IAI46_19685at 4157.577 kb on - strand, within IAI46_19685at 4157.623 kb on - strand, within IAI46_19685at 4157.653 kb on + strand, within IAI46_19685at 4157.704 kb on + strand, within IAI46_19685at 4157.704 kb on + strand, within IAI46_19685at 4157.704 kb on + strand, within IAI46_19685at 4157.704 kb on + strand, within IAI46_19685at 4157.705 kb on - strand, within IAI46_19685at 4157.705 kb on - strand, within IAI46_19685at 4157.705 kb on - strand, within IAI46_19685at 4157.708 kb on - strand, within IAI46_19685

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,155,321 + IAI46_19670 0.59 +0.8
4,155,353 + IAI46_19670 0.60 -0.9
4,155,354 - IAI46_19670 0.60 +0.3
4,155,354 - IAI46_19670 0.60 +0.3
4,155,367 - IAI46_19670 0.61 +0.7
4,155,381 - IAI46_19670 0.62 +0.5
4,155,437 - IAI46_19670 0.64 +0.2
4,155,484 - IAI46_19670 0.67 +0.4
4,155,535 - IAI46_19670 0.69 +0.4
4,155,732 - IAI46_19670 0.78 +0.3
4,155,838 + IAI46_19670 0.84 +0.6
4,155,838 + IAI46_19670 0.84 +0.3
4,155,840 + IAI46_19670 0.84 -0.6
4,155,866 - IAI46_19670 0.85 +0.2
4,155,866 - IAI46_19670 0.85 -0.8
4,155,943 - IAI46_19670 0.89 +0.4
4,155,945 - IAI46_19670 0.89 +0.4
4,155,945 - IAI46_19670 0.89 -1.4
4,155,945 - IAI46_19670 0.89 -0.9
4,155,965 + IAI46_19670 0.90 +0.8
4,156,003 + +0.5
4,156,004 - +0.1
4,156,084 + -0.3
4,156,084 + +0.6
4,156,085 - +0.7
4,156,087 - +0.9
4,156,152 - +0.3
4,156,195 + -0.1
4,156,257 - IAI46_19675 0.12 +0.9
4,156,351 - IAI46_19675 0.26 -0.9
4,156,410 - IAI46_19675 0.35 +0.4
4,156,411 + IAI46_19675 0.35 +0.4
4,156,518 + IAI46_19675 0.51 +0.9
4,156,536 - IAI46_19675 0.54 -0.0
4,156,568 + IAI46_19675 0.58 +0.1
4,156,604 + IAI46_19675 0.64 +1.7
4,156,604 + IAI46_19675 0.64 -1.1
4,156,604 + IAI46_19675 0.64 +0.7
4,156,605 - IAI46_19675 0.64 -2.3
4,156,605 - IAI46_19675 0.64 +0.9
4,156,618 - IAI46_19675 0.66 +0.1
4,156,670 - IAI46_19675 0.74 +0.4
4,156,670 - IAI46_19675 0.74 +0.8
4,156,697 + IAI46_19675 0.78 +0.3
4,156,751 + IAI46_19675 0.86 -0.7
4,156,819 - +0.7
4,156,826 + +0.1
4,156,834 + -0.9
4,156,834 + +0.0
4,156,834 + -0.1
4,156,835 - +0.6
4,156,836 + -0.3
4,156,836 + +0.5
4,156,837 - +0.2
4,156,837 - +0.2
4,156,837 - +0.2
4,156,837 - +0.4
4,156,837 - -0.4
4,156,840 + -0.5
4,156,840 + +0.6
4,156,841 - +0.5
4,156,845 + +1.0
4,156,845 + -0.1
4,156,846 - +0.9
4,156,851 + -0.1
4,156,851 + +0.2
4,156,851 + +0.3
4,156,851 + -0.4
4,156,852 - -0.7
4,156,856 + -0.1
4,156,856 + +0.4
4,156,856 + +0.4
4,156,878 + -1.2
4,156,879 - +0.2
4,157,077 - +0.7
4,157,144 + +0.7
4,157,145 - +0.4
4,157,147 - IAI46_19680 0.10 -0.4
4,157,147 - IAI46_19680 0.10 +0.6
4,157,164 - IAI46_19680 0.17 +0.4
4,157,188 - IAI46_19680 0.26 -0.1
4,157,218 - IAI46_19680 0.38 +0.3
4,157,218 - IAI46_19680 0.38 -1.1
4,157,230 - IAI46_19680 0.43 -0.2
4,157,258 + IAI46_19680 0.54 +0.2
4,157,293 + IAI46_19680 0.67 -0.1
4,157,296 + IAI46_19680 0.69 -1.7
4,157,297 - IAI46_19680 0.69 -1.9
4,157,339 + IAI46_19680 0.85 +0.7
4,157,341 + IAI46_19680 0.86 -0.1
4,157,472 - IAI46_19685 0.14 -0.1
4,157,541 - IAI46_19685 0.23 +1.5
4,157,541 - IAI46_19685 0.23 +0.6
4,157,554 + IAI46_19685 0.25 +0.6
4,157,564 + IAI46_19685 0.26 +0.0
4,157,564 + IAI46_19685 0.26 -0.4
4,157,565 - IAI46_19685 0.27 -0.6
4,157,576 + IAI46_19685 0.28 +0.9
4,157,577 - IAI46_19685 0.28 -0.1
4,157,623 - IAI46_19685 0.35 -0.0
4,157,653 + IAI46_19685 0.39 +1.3
4,157,704 + IAI46_19685 0.46 -0.6
4,157,704 + IAI46_19685 0.46 -0.7
4,157,704 + IAI46_19685 0.46 +0.6
4,157,704 + IAI46_19685 0.46 +0.1
4,157,705 - IAI46_19685 0.46 +0.0
4,157,705 - IAI46_19685 0.46 +0.9
4,157,705 - IAI46_19685 0.46 +0.3
4,157,708 - IAI46_19685 0.46 -0.1

Or see this region's nucleotide sequence