Strain Fitness in Serratia liquefaciens MT49 around IAI46_19445

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19440 and IAI46_19445 are separated by 116 nucleotidesIAI46_19445 and IAI46_19450 are separated by 669 nucleotides IAI46_19440: IAI46_19440 - gamma-aminobutyraldehyde dehydrogenase, at 4,104,385 to 4,105,848 _19440 IAI46_19445: IAI46_19445 - LysR family transcriptional regulator, at 4,105,965 to 4,106,888 _19445 IAI46_19450: IAI46_19450 - nitrogen regulatory protein P-II, at 4,107,558 to 4,107,896 _19450 Position (kb) 4105 4106 4107Strain fitness (log2 ratio) -2 -1 0 1 2at 4104.967 kb on - strand, within IAI46_19440at 4105.002 kb on - strand, within IAI46_19440at 4105.004 kb on + strand, within IAI46_19440at 4105.004 kb on + strand, within IAI46_19440at 4105.010 kb on + strand, within IAI46_19440at 4105.010 kb on + strand, within IAI46_19440at 4105.010 kb on + strand, within IAI46_19440at 4105.010 kb on + strand, within IAI46_19440at 4105.010 kb on + strand, within IAI46_19440at 4105.011 kb on - strand, within IAI46_19440at 4105.011 kb on - strand, within IAI46_19440at 4105.011 kb on - strand, within IAI46_19440at 4105.011 kb on - strand, within IAI46_19440at 4105.011 kb on - strand, within IAI46_19440at 4105.220 kb on + strand, within IAI46_19440at 4105.228 kb on - strand, within IAI46_19440at 4105.389 kb on + strand, within IAI46_19440at 4105.389 kb on + strand, within IAI46_19440at 4105.389 kb on + strand, within IAI46_19440at 4105.390 kb on - strand, within IAI46_19440at 4105.443 kb on + strand, within IAI46_19440at 4105.444 kb on - strand, within IAI46_19440at 4105.444 kb on - strand, within IAI46_19440at 4105.445 kb on + strand, within IAI46_19440at 4105.627 kb on - strand, within IAI46_19440at 4105.627 kb on - strand, within IAI46_19440at 4105.801 kb on - strandat 4105.804 kb on - strandat 4105.820 kb on - strandat 4105.894 kb on - strandat 4105.913 kb on + strandat 4105.913 kb on + strandat 4105.914 kb on - strandat 4105.914 kb on - strandat 4105.914 kb on - strandat 4105.997 kb on + strandat 4105.998 kb on - strandat 4105.998 kb on - strandat 4106.018 kb on + strandat 4106.071 kb on - strand, within IAI46_19445at 4106.124 kb on - strand, within IAI46_19445at 4106.124 kb on - strand, within IAI46_19445at 4106.150 kb on - strand, within IAI46_19445at 4106.264 kb on + strand, within IAI46_19445at 4106.264 kb on + strand, within IAI46_19445at 4106.265 kb on - strand, within IAI46_19445at 4106.297 kb on + strand, within IAI46_19445at 4106.298 kb on - strand, within IAI46_19445at 4106.492 kb on + strand, within IAI46_19445at 4106.492 kb on + strand, within IAI46_19445at 4106.494 kb on + strand, within IAI46_19445at 4106.495 kb on - strand, within IAI46_19445at 4106.546 kb on + strand, within IAI46_19445at 4106.556 kb on - strand, within IAI46_19445at 4106.556 kb on - strand, within IAI46_19445at 4106.681 kb on - strand, within IAI46_19445at 4106.681 kb on - strand, within IAI46_19445at 4106.751 kb on + strand, within IAI46_19445at 4106.751 kb on + strand, within IAI46_19445at 4106.751 kb on + strand, within IAI46_19445at 4106.751 kb on + strand, within IAI46_19445at 4106.751 kb on + strand, within IAI46_19445at 4106.752 kb on - strand, within IAI46_19445at 4106.859 kb on - strandat 4106.945 kb on + strandat 4106.945 kb on + strandat 4106.945 kb on + strandat 4106.946 kb on - strandat 4106.946 kb on - strandat 4106.946 kb on - strandat 4106.953 kb on + strandat 4106.954 kb on - strandat 4106.954 kb on - strandat 4106.954 kb on - strandat 4107.018 kb on - strandat 4107.054 kb on + strandat 4107.072 kb on + strandat 4107.072 kb on + strandat 4107.102 kb on - strandat 4107.109 kb on + strandat 4107.110 kb on - strandat 4107.110 kb on - strandat 4107.110 kb on - strandat 4107.135 kb on + strandat 4107.136 kb on - strandat 4107.350 kb on + strandat 4107.350 kb on + strandat 4107.359 kb on + strandat 4107.359 kb on + strandat 4107.408 kb on - strandat 4107.559 kb on + strandat 4107.560 kb on - strandat 4107.560 kb on - strandat 4107.594 kb on - strand, within IAI46_19450at 4107.594 kb on - strand, within IAI46_19450at 4107.745 kb on + strand, within IAI46_19450at 4107.745 kb on + strand, within IAI46_19450at 4107.746 kb on - strand, within IAI46_19450at 4107.761 kb on - strand, within IAI46_19450at 4107.875 kb on + strandat 4107.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,104,967 - IAI46_19440 0.40 -0.2
4,105,002 - IAI46_19440 0.42 +0.2
4,105,004 + IAI46_19440 0.42 +1.1
4,105,004 + IAI46_19440 0.42 -0.7
4,105,010 + IAI46_19440 0.43 -0.1
4,105,010 + IAI46_19440 0.43 +0.5
4,105,010 + IAI46_19440 0.43 -0.3
4,105,010 + IAI46_19440 0.43 -1.2
4,105,010 + IAI46_19440 0.43 +0.4
4,105,011 - IAI46_19440 0.43 -0.8
4,105,011 - IAI46_19440 0.43 -0.7
4,105,011 - IAI46_19440 0.43 +0.1
4,105,011 - IAI46_19440 0.43 +0.7
4,105,011 - IAI46_19440 0.43 -0.6
4,105,220 + IAI46_19440 0.57 -0.1
4,105,228 - IAI46_19440 0.58 +1.0
4,105,389 + IAI46_19440 0.69 -0.3
4,105,389 + IAI46_19440 0.69 +0.4
4,105,389 + IAI46_19440 0.69 +0.0
4,105,390 - IAI46_19440 0.69 -0.2
4,105,443 + IAI46_19440 0.72 +0.3
4,105,444 - IAI46_19440 0.72 -0.5
4,105,444 - IAI46_19440 0.72 +0.0
4,105,445 + IAI46_19440 0.72 +0.2
4,105,627 - IAI46_19440 0.85 -0.0
4,105,627 - IAI46_19440 0.85 +0.1
4,105,801 - +0.8
4,105,804 - -0.7
4,105,820 - +0.8
4,105,894 - +0.6
4,105,913 + +0.1
4,105,913 + +0.2
4,105,914 - +0.1
4,105,914 - +1.3
4,105,914 - -0.3
4,105,997 + +1.6
4,105,998 - -0.9
4,105,998 - +0.9
4,106,018 + -0.0
4,106,071 - IAI46_19445 0.11 +0.1
4,106,124 - IAI46_19445 0.17 +0.6
4,106,124 - IAI46_19445 0.17 +0.7
4,106,150 - IAI46_19445 0.20 +0.3
4,106,264 + IAI46_19445 0.32 +0.7
4,106,264 + IAI46_19445 0.32 -0.4
4,106,265 - IAI46_19445 0.32 -0.2
4,106,297 + IAI46_19445 0.36 -1.3
4,106,298 - IAI46_19445 0.36 +0.3
4,106,492 + IAI46_19445 0.57 -0.7
4,106,492 + IAI46_19445 0.57 -0.5
4,106,494 + IAI46_19445 0.57 -0.2
4,106,495 - IAI46_19445 0.57 +0.0
4,106,546 + IAI46_19445 0.63 -0.9
4,106,556 - IAI46_19445 0.64 -0.6
4,106,556 - IAI46_19445 0.64 +0.1
4,106,681 - IAI46_19445 0.77 +0.5
4,106,681 - IAI46_19445 0.77 +0.6
4,106,751 + IAI46_19445 0.85 -0.0
4,106,751 + IAI46_19445 0.85 +0.3
4,106,751 + IAI46_19445 0.85 +0.6
4,106,751 + IAI46_19445 0.85 -0.2
4,106,751 + IAI46_19445 0.85 -0.0
4,106,752 - IAI46_19445 0.85 -0.5
4,106,859 - +0.9
4,106,945 + -0.2
4,106,945 + -1.1
4,106,945 + +0.1
4,106,946 - +0.2
4,106,946 - -0.9
4,106,946 - +0.2
4,106,953 + +0.1
4,106,954 - +0.4
4,106,954 - +0.7
4,106,954 - +0.4
4,107,018 - -0.1
4,107,054 + -0.3
4,107,072 + +0.1
4,107,072 + +0.3
4,107,102 - -0.1
4,107,109 + +0.9
4,107,110 - +0.9
4,107,110 - -2.4
4,107,110 - +0.8
4,107,135 + -0.3
4,107,136 - -0.8
4,107,350 + -0.2
4,107,350 + +0.1
4,107,359 + +0.6
4,107,359 + +0.6
4,107,408 - +1.2
4,107,559 + -1.1
4,107,560 - +0.7
4,107,560 - +0.1
4,107,594 - IAI46_19450 0.11 +0.2
4,107,594 - IAI46_19450 0.11 +0.1
4,107,745 + IAI46_19450 0.55 -0.8
4,107,745 + IAI46_19450 0.55 -0.6
4,107,746 - IAI46_19450 0.55 +2.2
4,107,761 - IAI46_19450 0.60 +0.4
4,107,875 + -0.7
4,107,879 - -1.1

Or see this region's nucleotide sequence