Strain Fitness in Serratia liquefaciens MT49 around IAI46_19365

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19355 and IAI46_19360 are separated by 55 nucleotidesIAI46_19360 and IAI46_19365 are separated by 195 nucleotidesIAI46_19365 and IAI46_19370 are separated by 119 nucleotides IAI46_19355: IAI46_19355 - IscS subfamily cysteine desulfurase, at 4,084,071 to 4,085,285 _19355 IAI46_19360: IAI46_19360 - Fe-S cluster assembly transcriptional regulator IscR, at 4,085,341 to 4,085,835 _19360 IAI46_19365: IAI46_19365 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 4,086,031 to 4,086,765 _19365 IAI46_19370: IAI46_19370 - inositol-1-monophosphatase, at 4,086,885 to 4,087,688 _19370 Position (kb) 4086 4087Strain fitness (log2 ratio) -1 0 1 2at 4085.302 kb on - strandat 4085.302 kb on - strandat 4085.302 kb on - strandat 4085.342 kb on + strandat 4085.356 kb on - strandat 4085.356 kb on - strandat 4085.364 kb on + strandat 4085.464 kb on - strand, within IAI46_19360at 4085.599 kb on - strand, within IAI46_19360at 4085.702 kb on - strand, within IAI46_19360at 4085.702 kb on - strand, within IAI46_19360at 4085.715 kb on - strand, within IAI46_19360at 4085.728 kb on - strand, within IAI46_19360at 4085.797 kb on - strandat 4085.797 kb on - strandat 4085.821 kb on - strandat 4085.821 kb on - strandat 4085.821 kb on - strandat 4085.839 kb on + strandat 4085.840 kb on - strandat 4085.840 kb on - strandat 4085.840 kb on - strandat 4085.912 kb on - strandat 4085.946 kb on + strandat 4085.947 kb on - strandat 4085.977 kb on + strandat 4085.991 kb on - strandat 4085.994 kb on + strandat 4085.995 kb on - strandat 4086.000 kb on + strandat 4086.003 kb on + strandat 4086.133 kb on + strand, within IAI46_19365at 4086.287 kb on + strand, within IAI46_19365at 4086.288 kb on - strand, within IAI46_19365at 4086.288 kb on - strand, within IAI46_19365at 4086.288 kb on - strand, within IAI46_19365at 4086.305 kb on + strand, within IAI46_19365at 4086.305 kb on + strand, within IAI46_19365at 4086.306 kb on - strand, within IAI46_19365at 4086.306 kb on - strand, within IAI46_19365at 4086.377 kb on + strand, within IAI46_19365at 4086.378 kb on - strand, within IAI46_19365at 4086.583 kb on - strand, within IAI46_19365at 4086.666 kb on - strand, within IAI46_19365at 4086.666 kb on - strand, within IAI46_19365at 4086.756 kb on + strandat 4086.757 kb on - strandat 4086.757 kb on - strandat 4086.765 kb on + strandat 4086.765 kb on + strandat 4086.765 kb on + strandat 4086.765 kb on + strandat 4086.802 kb on - strandat 4086.802 kb on - strandat 4086.812 kb on + strandat 4087.649 kb on + strandat 4087.649 kb on + strandat 4087.699 kb on + strandat 4087.700 kb on - strandat 4087.700 kb on - strandat 4087.713 kb on + strandat 4087.713 kb on + strandat 4087.744 kb on - strandat 4087.752 kb on + strandat 4087.752 kb on + strandat 4087.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,085,302 - +1.0
4,085,302 - -0.2
4,085,302 - +1.9
4,085,342 + -0.2
4,085,356 - +0.4
4,085,356 - +0.3
4,085,364 + -0.1
4,085,464 - IAI46_19360 0.25 -0.6
4,085,599 - IAI46_19360 0.52 +0.4
4,085,702 - IAI46_19360 0.73 +0.1
4,085,702 - IAI46_19360 0.73 +0.3
4,085,715 - IAI46_19360 0.76 -0.2
4,085,728 - IAI46_19360 0.78 +1.2
4,085,797 - -0.7
4,085,797 - -0.1
4,085,821 - -0.6
4,085,821 - +0.3
4,085,821 - -1.0
4,085,839 + -0.9
4,085,840 - +0.2
4,085,840 - +0.2
4,085,840 - +0.6
4,085,912 - -1.2
4,085,946 + +0.7
4,085,947 - +0.4
4,085,977 + +0.0
4,085,991 - +0.0
4,085,994 + -0.1
4,085,995 - +1.1
4,086,000 + -0.5
4,086,003 + +0.3
4,086,133 + IAI46_19365 0.14 -0.7
4,086,287 + IAI46_19365 0.35 +0.3
4,086,288 - IAI46_19365 0.35 -0.1
4,086,288 - IAI46_19365 0.35 +0.3
4,086,288 - IAI46_19365 0.35 +1.1
4,086,305 + IAI46_19365 0.37 +0.3
4,086,305 + IAI46_19365 0.37 -0.5
4,086,306 - IAI46_19365 0.37 +0.2
4,086,306 - IAI46_19365 0.37 -0.0
4,086,377 + IAI46_19365 0.47 -0.4
4,086,378 - IAI46_19365 0.47 +0.4
4,086,583 - IAI46_19365 0.75 +0.4
4,086,666 - IAI46_19365 0.86 +0.3
4,086,666 - IAI46_19365 0.86 +0.1
4,086,756 + -0.3
4,086,757 - -0.4
4,086,757 - +0.5
4,086,765 + +0.1
4,086,765 + +0.5
4,086,765 + +0.0
4,086,765 + -0.7
4,086,802 - +0.1
4,086,802 - +0.0
4,086,812 + -0.4
4,087,649 + +0.4
4,087,649 + -0.9
4,087,699 + +0.5
4,087,700 - -0.2
4,087,700 - +0.2
4,087,713 + +0.7
4,087,713 + +0.2
4,087,744 - +0.0
4,087,752 + +0.3
4,087,752 + -0.3
4,087,753 - +0.4

Or see this region's nucleotide sequence