Strain Fitness in Serratia liquefaciens MT49 around IAI46_18635

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18630 and IAI46_18635 are separated by 775 nucleotidesIAI46_18635 and IAI46_18640 are separated by 114 nucleotidesIAI46_18640 and IAI46_18645 are separated by 48 nucleotides IAI46_18630: IAI46_18630 - transketolase, at 3,922,775 to 3,924,769 _18630 IAI46_18635: IAI46_18635 - urease accessory protein UreE, at 3,925,545 to 3,926,093 _18635 IAI46_18640: IAI46_18640 - helix-turn-helix domain-containing protein, at 3,926,208 to 3,926,630 _18640 IAI46_18645: IAI46_18645 - GDP-mannose pyrophosphatase NudK, at 3,926,679 to 3,927,254 _18645 Position (kb) 3925 3926 3927Strain fitness (log2 ratio) -1 0 1 2at 3925.141 kb on + strandat 3925.328 kb on - strandat 3925.511 kb on + strandat 3925.627 kb on - strand, within IAI46_18635at 3925.788 kb on - strand, within IAI46_18635at 3925.802 kb on + strand, within IAI46_18635at 3925.808 kb on - strand, within IAI46_18635at 3925.808 kb on - strand, within IAI46_18635at 3925.812 kb on - strand, within IAI46_18635at 3925.851 kb on - strand, within IAI46_18635at 3925.858 kb on - strand, within IAI46_18635at 3925.859 kb on + strand, within IAI46_18635at 3925.859 kb on + strand, within IAI46_18635at 3925.860 kb on - strand, within IAI46_18635at 3925.892 kb on + strand, within IAI46_18635at 3925.892 kb on + strand, within IAI46_18635at 3925.893 kb on - strand, within IAI46_18635at 3925.893 kb on - strand, within IAI46_18635at 3925.909 kb on + strand, within IAI46_18635at 3925.909 kb on + strand, within IAI46_18635at 3925.998 kb on + strand, within IAI46_18635at 3925.998 kb on + strand, within IAI46_18635at 3926.005 kb on - strand, within IAI46_18635at 3926.134 kb on + strandat 3926.166 kb on + strandat 3926.167 kb on - strandat 3926.194 kb on - strandat 3926.216 kb on + strandat 3926.217 kb on - strandat 3926.217 kb on - strandat 3926.220 kb on - strandat 3926.255 kb on - strand, within IAI46_18640at 3926.284 kb on + strand, within IAI46_18640at 3926.284 kb on + strand, within IAI46_18640at 3926.284 kb on + strand, within IAI46_18640at 3926.284 kb on + strand, within IAI46_18640at 3926.284 kb on + strand, within IAI46_18640at 3926.285 kb on - strand, within IAI46_18640at 3926.285 kb on - strand, within IAI46_18640at 3926.285 kb on - strand, within IAI46_18640at 3926.311 kb on - strand, within IAI46_18640at 3926.370 kb on + strand, within IAI46_18640at 3926.370 kb on + strand, within IAI46_18640at 3926.370 kb on + strand, within IAI46_18640at 3926.371 kb on - strand, within IAI46_18640at 3926.373 kb on - strand, within IAI46_18640at 3926.451 kb on + strand, within IAI46_18640at 3926.451 kb on + strand, within IAI46_18640at 3926.452 kb on - strand, within IAI46_18640at 3926.546 kb on + strand, within IAI46_18640at 3926.547 kb on - strand, within IAI46_18640at 3926.568 kb on + strand, within IAI46_18640at 3926.568 kb on + strand, within IAI46_18640at 3926.568 kb on + strand, within IAI46_18640at 3926.568 kb on + strand, within IAI46_18640at 3926.569 kb on - strand, within IAI46_18640at 3926.569 kb on - strand, within IAI46_18640at 3926.569 kb on - strand, within IAI46_18640at 3926.569 kb on - strand, within IAI46_18640at 3926.569 kb on - strand, within IAI46_18640at 3926.624 kb on + strandat 3926.624 kb on + strandat 3926.624 kb on + strandat 3926.624 kb on + strandat 3926.624 kb on + strandat 3926.624 kb on + strandat 3926.625 kb on - strandat 3926.625 kb on - strandat 3926.625 kb on - strandat 3926.625 kb on - strandat 3926.629 kb on - strandat 3926.707 kb on + strandat 3926.708 kb on - strandat 3926.738 kb on + strand, within IAI46_18645at 3926.742 kb on - strand, within IAI46_18645at 3926.787 kb on + strand, within IAI46_18645at 3926.787 kb on + strand, within IAI46_18645at 3926.791 kb on - strand, within IAI46_18645at 3926.848 kb on + strand, within IAI46_18645at 3926.858 kb on + strand, within IAI46_18645at 3926.897 kb on + strand, within IAI46_18645at 3926.897 kb on + strand, within IAI46_18645at 3926.898 kb on - strand, within IAI46_18645at 3926.899 kb on + strand, within IAI46_18645at 3926.899 kb on + strand, within IAI46_18645at 3926.899 kb on + strand, within IAI46_18645at 3926.900 kb on - strand, within IAI46_18645at 3926.900 kb on - strand, within IAI46_18645at 3926.900 kb on - strand, within IAI46_18645at 3926.900 kb on - strand, within IAI46_18645at 3927.012 kb on + strand, within IAI46_18645at 3927.043 kb on + strand, within IAI46_18645at 3927.043 kb on + strand, within IAI46_18645at 3927.043 kb on + strand, within IAI46_18645at 3927.044 kb on - strand, within IAI46_18645

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,925,141 + +0.4
3,925,328 - -0.7
3,925,511 + -0.1
3,925,627 - IAI46_18635 0.15 -0.1
3,925,788 - IAI46_18635 0.44 -0.3
3,925,802 + IAI46_18635 0.47 -0.7
3,925,808 - IAI46_18635 0.48 -1.1
3,925,808 - IAI46_18635 0.48 -0.1
3,925,812 - IAI46_18635 0.49 +0.1
3,925,851 - IAI46_18635 0.56 +0.0
3,925,858 - IAI46_18635 0.57 +0.2
3,925,859 + IAI46_18635 0.57 +0.1
3,925,859 + IAI46_18635 0.57 +1.3
3,925,860 - IAI46_18635 0.57 -0.2
3,925,892 + IAI46_18635 0.63 +0.7
3,925,892 + IAI46_18635 0.63 +0.1
3,925,893 - IAI46_18635 0.63 +0.4
3,925,893 - IAI46_18635 0.63 +2.0
3,925,909 + IAI46_18635 0.66 -1.4
3,925,909 + IAI46_18635 0.66 +0.3
3,925,998 + IAI46_18635 0.83 -0.0
3,925,998 + IAI46_18635 0.83 -0.4
3,926,005 - IAI46_18635 0.84 -0.4
3,926,134 + +0.2
3,926,166 + -0.3
3,926,167 - -0.1
3,926,194 - -0.9
3,926,216 + +0.2
3,926,217 - -0.5
3,926,217 - +1.4
3,926,220 - +0.6
3,926,255 - IAI46_18640 0.11 +0.4
3,926,284 + IAI46_18640 0.18 -0.2
3,926,284 + IAI46_18640 0.18 -0.4
3,926,284 + IAI46_18640 0.18 -0.1
3,926,284 + IAI46_18640 0.18 -0.2
3,926,284 + IAI46_18640 0.18 +0.8
3,926,285 - IAI46_18640 0.18 +1.7
3,926,285 - IAI46_18640 0.18 +0.3
3,926,285 - IAI46_18640 0.18 +0.1
3,926,311 - IAI46_18640 0.24 +0.5
3,926,370 + IAI46_18640 0.38 -0.7
3,926,370 + IAI46_18640 0.38 +0.1
3,926,370 + IAI46_18640 0.38 -0.6
3,926,371 - IAI46_18640 0.39 +0.4
3,926,373 - IAI46_18640 0.39 -0.3
3,926,451 + IAI46_18640 0.57 -1.0
3,926,451 + IAI46_18640 0.57 -1.7
3,926,452 - IAI46_18640 0.58 -0.3
3,926,546 + IAI46_18640 0.80 +0.4
3,926,547 - IAI46_18640 0.80 +0.6
3,926,568 + IAI46_18640 0.85 -0.3
3,926,568 + IAI46_18640 0.85 +0.5
3,926,568 + IAI46_18640 0.85 -0.2
3,926,568 + IAI46_18640 0.85 +0.7
3,926,569 - IAI46_18640 0.85 -0.1
3,926,569 - IAI46_18640 0.85 +0.1
3,926,569 - IAI46_18640 0.85 +0.1
3,926,569 - IAI46_18640 0.85 -0.3
3,926,569 - IAI46_18640 0.85 -0.3
3,926,624 + +0.3
3,926,624 + +0.1
3,926,624 + -0.2
3,926,624 + -0.1
3,926,624 + +0.2
3,926,624 + +0.5
3,926,625 - +0.4
3,926,625 - +0.4
3,926,625 - -0.1
3,926,625 - +0.4
3,926,629 - -1.0
3,926,707 + +0.2
3,926,708 - -0.5
3,926,738 + IAI46_18645 0.10 +0.3
3,926,742 - IAI46_18645 0.11 +0.6
3,926,787 + IAI46_18645 0.19 -0.1
3,926,787 + IAI46_18645 0.19 -0.3
3,926,791 - IAI46_18645 0.19 +0.1
3,926,848 + IAI46_18645 0.29 -0.8
3,926,858 + IAI46_18645 0.31 +0.7
3,926,897 + IAI46_18645 0.38 -0.1
3,926,897 + IAI46_18645 0.38 +0.2
3,926,898 - IAI46_18645 0.38 -1.2
3,926,899 + IAI46_18645 0.38 -0.1
3,926,899 + IAI46_18645 0.38 -0.1
3,926,899 + IAI46_18645 0.38 -0.9
3,926,900 - IAI46_18645 0.38 +0.0
3,926,900 - IAI46_18645 0.38 +1.1
3,926,900 - IAI46_18645 0.38 +0.2
3,926,900 - IAI46_18645 0.38 +1.2
3,927,012 + IAI46_18645 0.58 +0.4
3,927,043 + IAI46_18645 0.63 -0.5
3,927,043 + IAI46_18645 0.63 -0.5
3,927,043 + IAI46_18645 0.63 +0.8
3,927,044 - IAI46_18645 0.63 +0.3

Or see this region's nucleotide sequence