Experiment: No stress control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18630 and IAI46_18635 are separated by 775 nucleotides IAI46_18635 and IAI46_18640 are separated by 114 nucleotides IAI46_18640 and IAI46_18645 are separated by 48 nucleotides
IAI46_18630: IAI46_18630 - transketolase, at 3,922,775 to 3,924,769
_18630
IAI46_18635: IAI46_18635 - urease accessory protein UreE, at 3,925,545 to 3,926,093
_18635
IAI46_18640: IAI46_18640 - helix-turn-helix domain-containing protein, at 3,926,208 to 3,926,630
_18640
IAI46_18645: IAI46_18645 - GDP-mannose pyrophosphatase NudK, at 3,926,679 to 3,927,254
_18645
Position (kb)
3925
3926
3927 Strain fitness (log2 ratio)
-1
0
1
2 at 3925.141 kb on + strand at 3925.328 kb on - strand at 3925.511 kb on + strand at 3925.627 kb on - strand, within IAI46_18635 at 3925.788 kb on - strand, within IAI46_18635 at 3925.802 kb on + strand, within IAI46_18635 at 3925.808 kb on - strand, within IAI46_18635 at 3925.808 kb on - strand, within IAI46_18635 at 3925.812 kb on - strand, within IAI46_18635 at 3925.851 kb on - strand, within IAI46_18635 at 3925.858 kb on - strand, within IAI46_18635 at 3925.859 kb on + strand, within IAI46_18635 at 3925.859 kb on + strand, within IAI46_18635 at 3925.860 kb on - strand, within IAI46_18635 at 3925.892 kb on + strand, within IAI46_18635 at 3925.892 kb on + strand, within IAI46_18635 at 3925.893 kb on - strand, within IAI46_18635 at 3925.893 kb on - strand, within IAI46_18635 at 3925.909 kb on + strand, within IAI46_18635 at 3925.909 kb on + strand, within IAI46_18635 at 3925.998 kb on + strand, within IAI46_18635 at 3925.998 kb on + strand, within IAI46_18635 at 3926.005 kb on - strand, within IAI46_18635 at 3926.134 kb on + strand at 3926.166 kb on + strand at 3926.167 kb on - strand at 3926.194 kb on - strand at 3926.216 kb on + strand at 3926.217 kb on - strand at 3926.217 kb on - strand at 3926.220 kb on - strand at 3926.255 kb on - strand, within IAI46_18640 at 3926.284 kb on + strand, within IAI46_18640 at 3926.284 kb on + strand, within IAI46_18640 at 3926.284 kb on + strand, within IAI46_18640 at 3926.284 kb on + strand, within IAI46_18640 at 3926.284 kb on + strand, within IAI46_18640 at 3926.285 kb on - strand, within IAI46_18640 at 3926.285 kb on - strand, within IAI46_18640 at 3926.285 kb on - strand, within IAI46_18640 at 3926.311 kb on - strand, within IAI46_18640 at 3926.370 kb on + strand, within IAI46_18640 at 3926.370 kb on + strand, within IAI46_18640 at 3926.370 kb on + strand, within IAI46_18640 at 3926.371 kb on - strand, within IAI46_18640 at 3926.373 kb on - strand, within IAI46_18640 at 3926.451 kb on + strand, within IAI46_18640 at 3926.451 kb on + strand, within IAI46_18640 at 3926.452 kb on - strand, within IAI46_18640 at 3926.546 kb on + strand, within IAI46_18640 at 3926.547 kb on - strand, within IAI46_18640 at 3926.568 kb on + strand, within IAI46_18640 at 3926.568 kb on + strand, within IAI46_18640 at 3926.568 kb on + strand, within IAI46_18640 at 3926.568 kb on + strand, within IAI46_18640 at 3926.569 kb on - strand, within IAI46_18640 at 3926.569 kb on - strand, within IAI46_18640 at 3926.569 kb on - strand, within IAI46_18640 at 3926.569 kb on - strand, within IAI46_18640 at 3926.569 kb on - strand, within IAI46_18640 at 3926.624 kb on + strand at 3926.624 kb on + strand at 3926.624 kb on + strand at 3926.624 kb on + strand at 3926.624 kb on + strand at 3926.624 kb on + strand at 3926.625 kb on - strand at 3926.625 kb on - strand at 3926.625 kb on - strand at 3926.625 kb on - strand at 3926.629 kb on - strand at 3926.707 kb on + strand at 3926.708 kb on - strand at 3926.738 kb on + strand, within IAI46_18645 at 3926.742 kb on - strand, within IAI46_18645 at 3926.787 kb on + strand, within IAI46_18645 at 3926.787 kb on + strand, within IAI46_18645 at 3926.791 kb on - strand, within IAI46_18645 at 3926.848 kb on + strand, within IAI46_18645 at 3926.858 kb on + strand, within IAI46_18645 at 3926.897 kb on + strand, within IAI46_18645 at 3926.897 kb on + strand, within IAI46_18645 at 3926.898 kb on - strand, within IAI46_18645 at 3926.899 kb on + strand, within IAI46_18645 at 3926.899 kb on + strand, within IAI46_18645 at 3926.899 kb on + strand, within IAI46_18645 at 3926.900 kb on - strand, within IAI46_18645 at 3926.900 kb on - strand, within IAI46_18645 at 3926.900 kb on - strand, within IAI46_18645 at 3926.900 kb on - strand, within IAI46_18645 at 3927.012 kb on + strand, within IAI46_18645 at 3927.043 kb on + strand, within IAI46_18645 at 3927.043 kb on + strand, within IAI46_18645 at 3927.043 kb on + strand, within IAI46_18645 at 3927.044 kb on - strand, within IAI46_18645
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, aerobic remove 3,925,141 + +0.4 3,925,328 - -0.7 3,925,511 + -0.1 3,925,627 - IAI46_18635 0.15 -0.1 3,925,788 - IAI46_18635 0.44 -0.3 3,925,802 + IAI46_18635 0.47 -0.7 3,925,808 - IAI46_18635 0.48 -1.1 3,925,808 - IAI46_18635 0.48 -0.1 3,925,812 - IAI46_18635 0.49 +0.1 3,925,851 - IAI46_18635 0.56 +0.0 3,925,858 - IAI46_18635 0.57 +0.2 3,925,859 + IAI46_18635 0.57 +0.1 3,925,859 + IAI46_18635 0.57 +1.3 3,925,860 - IAI46_18635 0.57 -0.2 3,925,892 + IAI46_18635 0.63 +0.7 3,925,892 + IAI46_18635 0.63 +0.1 3,925,893 - IAI46_18635 0.63 +0.4 3,925,893 - IAI46_18635 0.63 +2.0 3,925,909 + IAI46_18635 0.66 -1.4 3,925,909 + IAI46_18635 0.66 +0.3 3,925,998 + IAI46_18635 0.83 -0.0 3,925,998 + IAI46_18635 0.83 -0.4 3,926,005 - IAI46_18635 0.84 -0.4 3,926,134 + +0.2 3,926,166 + -0.3 3,926,167 - -0.1 3,926,194 - -0.9 3,926,216 + +0.2 3,926,217 - -0.5 3,926,217 - +1.4 3,926,220 - +0.6 3,926,255 - IAI46_18640 0.11 +0.4 3,926,284 + IAI46_18640 0.18 -0.2 3,926,284 + IAI46_18640 0.18 -0.4 3,926,284 + IAI46_18640 0.18 -0.1 3,926,284 + IAI46_18640 0.18 -0.2 3,926,284 + IAI46_18640 0.18 +0.8 3,926,285 - IAI46_18640 0.18 +1.7 3,926,285 - IAI46_18640 0.18 +0.3 3,926,285 - IAI46_18640 0.18 +0.1 3,926,311 - IAI46_18640 0.24 +0.5 3,926,370 + IAI46_18640 0.38 -0.7 3,926,370 + IAI46_18640 0.38 +0.1 3,926,370 + IAI46_18640 0.38 -0.6 3,926,371 - IAI46_18640 0.39 +0.4 3,926,373 - IAI46_18640 0.39 -0.3 3,926,451 + IAI46_18640 0.57 -1.0 3,926,451 + IAI46_18640 0.57 -1.7 3,926,452 - IAI46_18640 0.58 -0.3 3,926,546 + IAI46_18640 0.80 +0.4 3,926,547 - IAI46_18640 0.80 +0.6 3,926,568 + IAI46_18640 0.85 -0.3 3,926,568 + IAI46_18640 0.85 +0.5 3,926,568 + IAI46_18640 0.85 -0.2 3,926,568 + IAI46_18640 0.85 +0.7 3,926,569 - IAI46_18640 0.85 -0.1 3,926,569 - IAI46_18640 0.85 +0.1 3,926,569 - IAI46_18640 0.85 +0.1 3,926,569 - IAI46_18640 0.85 -0.3 3,926,569 - IAI46_18640 0.85 -0.3 3,926,624 + +0.3 3,926,624 + +0.1 3,926,624 + -0.2 3,926,624 + -0.1 3,926,624 + +0.2 3,926,624 + +0.5 3,926,625 - +0.4 3,926,625 - +0.4 3,926,625 - -0.1 3,926,625 - +0.4 3,926,629 - -1.0 3,926,707 + +0.2 3,926,708 - -0.5 3,926,738 + IAI46_18645 0.10 +0.3 3,926,742 - IAI46_18645 0.11 +0.6 3,926,787 + IAI46_18645 0.19 -0.1 3,926,787 + IAI46_18645 0.19 -0.3 3,926,791 - IAI46_18645 0.19 +0.1 3,926,848 + IAI46_18645 0.29 -0.8 3,926,858 + IAI46_18645 0.31 +0.7 3,926,897 + IAI46_18645 0.38 -0.1 3,926,897 + IAI46_18645 0.38 +0.2 3,926,898 - IAI46_18645 0.38 -1.2 3,926,899 + IAI46_18645 0.38 -0.1 3,926,899 + IAI46_18645 0.38 -0.1 3,926,899 + IAI46_18645 0.38 -0.9 3,926,900 - IAI46_18645 0.38 +0.0 3,926,900 - IAI46_18645 0.38 +1.1 3,926,900 - IAI46_18645 0.38 +0.2 3,926,900 - IAI46_18645 0.38 +1.2 3,927,012 + IAI46_18645 0.58 +0.4 3,927,043 + IAI46_18645 0.63 -0.5 3,927,043 + IAI46_18645 0.63 -0.5 3,927,043 + IAI46_18645 0.63 +0.8 3,927,044 - IAI46_18645 0.63 +0.3
Or see this region's nucleotide sequence