Strain Fitness in Serratia liquefaciens MT49 around IAI46_17440

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_17435 and IAI46_17440 are separated by 53 nucleotidesIAI46_17440 and IAI46_17445 are separated by 21 nucleotides IAI46_17435: IAI46_17435 - DUF4186 domain-containing protein, at 3,660,198 to 3,660,602 _17435 IAI46_17440: IAI46_17440 - MFS transporter, at 3,660,656 to 3,661,810 _17440 IAI46_17445: IAI46_17445 - phosphotransferase RcsD, at 3,661,832 to 3,664,534 _17445 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -2 -1 0 1at 3659.687 kb on + strandat 3659.781 kb on + strandat 3659.827 kb on - strandat 3659.871 kb on - strandat 3659.876 kb on + strandat 3659.891 kb on + strandat 3659.940 kb on + strandat 3659.945 kb on - strandat 3659.973 kb on + strandat 3660.002 kb on + strandat 3660.003 kb on - strandat 3660.060 kb on + strandat 3660.096 kb on + strandat 3660.203 kb on - strandat 3660.203 kb on - strandat 3660.465 kb on - strand, within IAI46_17435at 3660.465 kb on - strand, within IAI46_17435at 3660.465 kb on - strand, within IAI46_17435at 3660.507 kb on + strand, within IAI46_17435at 3660.508 kb on - strand, within IAI46_17435at 3660.510 kb on - strand, within IAI46_17435at 3660.510 kb on - strand, within IAI46_17435at 3660.604 kb on - strandat 3660.639 kb on + strandat 3660.640 kb on - strandat 3660.669 kb on + strandat 3660.669 kb on + strandat 3660.670 kb on - strandat 3660.933 kb on - strand, within IAI46_17440at 3660.958 kb on + strand, within IAI46_17440at 3660.958 kb on + strand, within IAI46_17440at 3660.958 kb on + strand, within IAI46_17440at 3660.958 kb on + strand, within IAI46_17440at 3660.959 kb on - strand, within IAI46_17440at 3661.030 kb on + strand, within IAI46_17440at 3661.030 kb on + strand, within IAI46_17440at 3661.033 kb on - strand, within IAI46_17440at 3661.033 kb on - strand, within IAI46_17440at 3661.129 kb on + strand, within IAI46_17440at 3661.183 kb on - strand, within IAI46_17440at 3661.224 kb on + strand, within IAI46_17440at 3661.310 kb on - strand, within IAI46_17440at 3661.475 kb on + strand, within IAI46_17440at 3661.475 kb on + strand, within IAI46_17440at 3661.475 kb on + strand, within IAI46_17440at 3661.477 kb on + strand, within IAI46_17440at 3661.477 kb on + strand, within IAI46_17440at 3661.477 kb on + strand, within IAI46_17440at 3661.478 kb on - strand, within IAI46_17440at 3661.592 kb on - strand, within IAI46_17440at 3661.636 kb on + strand, within IAI46_17440at 3661.636 kb on + strand, within IAI46_17440at 3661.674 kb on + strand, within IAI46_17440at 3661.675 kb on - strand, within IAI46_17440at 3661.679 kb on + strand, within IAI46_17440at 3661.679 kb on + strand, within IAI46_17440at 3661.767 kb on + strandat 3661.767 kb on + strandat 3661.768 kb on - strandat 3661.768 kb on - strandat 3661.832 kb on - strandat 3661.867 kb on + strandat 3661.868 kb on - strandat 3661.868 kb on - strandat 3661.870 kb on + strandat 3661.870 kb on + strandat 3661.934 kb on + strandat 3661.935 kb on - strandat 3661.937 kb on - strandat 3661.937 kb on - strandat 3662.012 kb on + strandat 3662.111 kb on + strand, within IAI46_17445at 3662.115 kb on - strand, within IAI46_17445at 3662.204 kb on + strand, within IAI46_17445at 3662.205 kb on - strand, within IAI46_17445at 3662.205 kb on - strand, within IAI46_17445at 3662.249 kb on + strand, within IAI46_17445at 3662.249 kb on + strand, within IAI46_17445at 3662.250 kb on - strand, within IAI46_17445at 3662.257 kb on + strand, within IAI46_17445at 3662.461 kb on + strand, within IAI46_17445at 3662.525 kb on - strand, within IAI46_17445at 3662.536 kb on + strand, within IAI46_17445at 3662.537 kb on - strand, within IAI46_17445at 3662.627 kb on - strand, within IAI46_17445at 3662.682 kb on + strand, within IAI46_17445at 3662.740 kb on + strand, within IAI46_17445at 3662.740 kb on + strand, within IAI46_17445at 3662.740 kb on + strand, within IAI46_17445at 3662.741 kb on - strand, within IAI46_17445at 3662.749 kb on - strand, within IAI46_17445at 3662.795 kb on + strand, within IAI46_17445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
3,659,687 + +0.2
3,659,781 + -0.1
3,659,827 - -1.1
3,659,871 - +0.3
3,659,876 + -0.8
3,659,891 + +0.3
3,659,940 + +0.2
3,659,945 - -0.9
3,659,973 + +0.1
3,660,002 + +0.1
3,660,003 - +0.1
3,660,060 + -0.7
3,660,096 + -0.4
3,660,203 - +1.0
3,660,203 - +0.8
3,660,465 - IAI46_17435 0.66 +0.2
3,660,465 - IAI46_17435 0.66 +0.5
3,660,465 - IAI46_17435 0.66 -0.4
3,660,507 + IAI46_17435 0.76 +0.4
3,660,508 - IAI46_17435 0.77 +0.2
3,660,510 - IAI46_17435 0.77 -0.2
3,660,510 - IAI46_17435 0.77 -0.1
3,660,604 - +0.7
3,660,639 + +0.5
3,660,640 - -0.2
3,660,669 + +0.3
3,660,669 + -0.5
3,660,670 - -0.3
3,660,933 - IAI46_17440 0.24 +0.3
3,660,958 + IAI46_17440 0.26 -1.2
3,660,958 + IAI46_17440 0.26 -0.1
3,660,958 + IAI46_17440 0.26 +0.3
3,660,958 + IAI46_17440 0.26 +0.1
3,660,959 - IAI46_17440 0.26 +0.2
3,661,030 + IAI46_17440 0.32 +0.8
3,661,030 + IAI46_17440 0.32 +0.7
3,661,033 - IAI46_17440 0.33 +0.9
3,661,033 - IAI46_17440 0.33 +0.1
3,661,129 + IAI46_17440 0.41 -0.9
3,661,183 - IAI46_17440 0.46 +1.1
3,661,224 + IAI46_17440 0.49 +0.4
3,661,310 - IAI46_17440 0.57 +0.2
3,661,475 + IAI46_17440 0.71 +0.5
3,661,475 + IAI46_17440 0.71 -0.9
3,661,475 + IAI46_17440 0.71 +0.3
3,661,477 + IAI46_17440 0.71 +0.6
3,661,477 + IAI46_17440 0.71 -0.2
3,661,477 + IAI46_17440 0.71 +0.2
3,661,478 - IAI46_17440 0.71 -0.9
3,661,592 - IAI46_17440 0.81 +0.2
3,661,636 + IAI46_17440 0.85 +1.0
3,661,636 + IAI46_17440 0.85 -0.9
3,661,674 + IAI46_17440 0.88 +0.0
3,661,675 - IAI46_17440 0.88 +0.9
3,661,679 + IAI46_17440 0.89 +0.8
3,661,679 + IAI46_17440 0.89 +0.5
3,661,767 + -0.1
3,661,767 + +0.8
3,661,768 - -2.2
3,661,768 - +0.3
3,661,832 - +0.8
3,661,867 + +1.4
3,661,868 - -1.2
3,661,868 - +0.6
3,661,870 + -1.5
3,661,870 + +0.6
3,661,934 + +0.2
3,661,935 - +0.7
3,661,937 - -0.4
3,661,937 - +0.6
3,662,012 + -1.0
3,662,111 + IAI46_17445 0.10 +0.6
3,662,115 - IAI46_17445 0.10 -0.2
3,662,204 + IAI46_17445 0.14 -0.5
3,662,205 - IAI46_17445 0.14 +1.4
3,662,205 - IAI46_17445 0.14 -1.0
3,662,249 + IAI46_17445 0.15 +0.5
3,662,249 + IAI46_17445 0.15 -0.2
3,662,250 - IAI46_17445 0.15 -1.1
3,662,257 + IAI46_17445 0.16 +0.5
3,662,461 + IAI46_17445 0.23 +0.5
3,662,525 - IAI46_17445 0.26 -1.0
3,662,536 + IAI46_17445 0.26 +0.7
3,662,537 - IAI46_17445 0.26 +0.3
3,662,627 - IAI46_17445 0.29 +0.1
3,662,682 + IAI46_17445 0.31 -1.2
3,662,740 + IAI46_17445 0.34 +0.3
3,662,740 + IAI46_17445 0.34 -0.6
3,662,740 + IAI46_17445 0.34 -0.9
3,662,741 - IAI46_17445 0.34 +0.3
3,662,749 - IAI46_17445 0.34 -0.9
3,662,795 + IAI46_17445 0.36 +0.6

Or see this region's nucleotide sequence