Strain Fitness in Serratia liquefaciens MT49 around IAI46_17320

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17315 and IAI46_17320 are separated by 10 nucleotidesIAI46_17320 and IAI46_17325 overlap by 4 nucleotides IAI46_17315: IAI46_17315 - ABC transporter substrate-binding protein, at 3,637,158 to 3,638,966 _17315 IAI46_17320: IAI46_17320 - microcin C ABC transporter permease YejB, at 3,638,977 to 3,640,071 _17320 IAI46_17325: IAI46_17325 - ABC transporter permease subunit, at 3,640,068 to 3,641,093 _17325 Position (kb) 3638 3639 3640 3641Strain fitness (log2 ratio) -1 0 1at 3638.037 kb on + strand, within IAI46_17315at 3638.037 kb on + strand, within IAI46_17315at 3638.037 kb on + strand, within IAI46_17315at 3638.038 kb on - strand, within IAI46_17315at 3638.038 kb on - strand, within IAI46_17315at 3638.039 kb on + strand, within IAI46_17315at 3638.040 kb on - strand, within IAI46_17315at 3638.040 kb on - strand, within IAI46_17315at 3638.041 kb on + strand, within IAI46_17315at 3638.042 kb on - strand, within IAI46_17315at 3638.185 kb on - strand, within IAI46_17315at 3638.187 kb on + strand, within IAI46_17315at 3638.196 kb on + strand, within IAI46_17315at 3638.197 kb on - strand, within IAI46_17315at 3638.214 kb on + strand, within IAI46_17315at 3638.318 kb on + strand, within IAI46_17315at 3638.318 kb on + strand, within IAI46_17315at 3638.318 kb on + strand, within IAI46_17315at 3638.319 kb on - strand, within IAI46_17315at 3638.319 kb on - strand, within IAI46_17315at 3638.323 kb on - strand, within IAI46_17315at 3638.493 kb on + strand, within IAI46_17315at 3638.493 kb on + strand, within IAI46_17315at 3638.497 kb on + strand, within IAI46_17315at 3638.497 kb on + strand, within IAI46_17315at 3638.497 kb on + strand, within IAI46_17315at 3638.498 kb on - strand, within IAI46_17315at 3638.537 kb on + strand, within IAI46_17315at 3638.561 kb on - strand, within IAI46_17315at 3638.616 kb on + strand, within IAI46_17315at 3638.671 kb on - strand, within IAI46_17315at 3638.814 kb on + strandat 3638.815 kb on - strandat 3638.815 kb on - strandat 3638.832 kb on + strandat 3638.850 kb on + strandat 3638.933 kb on + strandat 3638.933 kb on + strandat 3638.934 kb on - strandat 3638.964 kb on + strandat 3638.990 kb on + strandat 3638.991 kb on - strandat 3639.043 kb on - strandat 3639.052 kb on - strandat 3639.052 kb on - strandat 3639.366 kb on + strand, within IAI46_17320at 3639.367 kb on - strand, within IAI46_17320at 3639.402 kb on + strand, within IAI46_17320at 3639.416 kb on - strand, within IAI46_17320at 3639.453 kb on - strand, within IAI46_17320at 3639.457 kb on - strand, within IAI46_17320at 3639.496 kb on - strand, within IAI46_17320at 3639.626 kb on - strand, within IAI46_17320at 3639.644 kb on - strand, within IAI46_17320at 3639.644 kb on - strand, within IAI46_17320at 3639.654 kb on + strand, within IAI46_17320at 3639.748 kb on + strand, within IAI46_17320at 3639.749 kb on - strand, within IAI46_17320at 3639.923 kb on + strand, within IAI46_17320at 3639.924 kb on - strand, within IAI46_17320at 3639.924 kb on - strand, within IAI46_17320at 3639.976 kb on + strandat 3639.976 kb on + strandat 3639.977 kb on - strandat 3639.978 kb on + strandat 3640.009 kb on - strandat 3640.027 kb on + strandat 3640.028 kb on - strandat 3640.030 kb on - strandat 3640.371 kb on + strand, within IAI46_17325at 3640.371 kb on + strand, within IAI46_17325at 3640.372 kb on - strand, within IAI46_17325at 3640.569 kb on + strand, within IAI46_17325at 3640.569 kb on + strand, within IAI46_17325at 3640.582 kb on + strand, within IAI46_17325at 3640.663 kb on + strand, within IAI46_17325at 3640.761 kb on + strand, within IAI46_17325at 3640.767 kb on + strand, within IAI46_17325at 3640.768 kb on - strand, within IAI46_17325at 3640.768 kb on - strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.811 kb on + strand, within IAI46_17325at 3640.812 kb on - strand, within IAI46_17325at 3640.812 kb on - strand, within IAI46_17325at 3640.812 kb on - strand, within IAI46_17325at 3640.823 kb on + strand, within IAI46_17325

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,638,037 + IAI46_17315 0.49 -1.5
3,638,037 + IAI46_17315 0.49 +1.7
3,638,037 + IAI46_17315 0.49 -0.7
3,638,038 - IAI46_17315 0.49 -0.4
3,638,038 - IAI46_17315 0.49 +0.3
3,638,039 + IAI46_17315 0.49 +0.7
3,638,040 - IAI46_17315 0.49 +0.7
3,638,040 - IAI46_17315 0.49 +1.7
3,638,041 + IAI46_17315 0.49 +0.7
3,638,042 - IAI46_17315 0.49 -0.1
3,638,185 - IAI46_17315 0.57 -0.1
3,638,187 + IAI46_17315 0.57 -0.3
3,638,196 + IAI46_17315 0.57 +0.1
3,638,197 - IAI46_17315 0.57 +0.1
3,638,214 + IAI46_17315 0.58 +1.1
3,638,318 + IAI46_17315 0.64 +0.5
3,638,318 + IAI46_17315 0.64 -0.3
3,638,318 + IAI46_17315 0.64 +0.3
3,638,319 - IAI46_17315 0.64 +1.5
3,638,319 - IAI46_17315 0.64 -0.3
3,638,323 - IAI46_17315 0.64 -0.2
3,638,493 + IAI46_17315 0.74 -0.0
3,638,493 + IAI46_17315 0.74 -0.7
3,638,497 + IAI46_17315 0.74 +0.2
3,638,497 + IAI46_17315 0.74 +1.1
3,638,497 + IAI46_17315 0.74 -1.0
3,638,498 - IAI46_17315 0.74 +0.2
3,638,537 + IAI46_17315 0.76 +0.2
3,638,561 - IAI46_17315 0.78 +1.1
3,638,616 + IAI46_17315 0.81 -0.4
3,638,671 - IAI46_17315 0.84 +0.9
3,638,814 + +0.5
3,638,815 - +1.3
3,638,815 - -0.3
3,638,832 + -1.1
3,638,850 + +0.0
3,638,933 + +0.2
3,638,933 + -0.2
3,638,934 - -0.3
3,638,964 + +0.6
3,638,990 + +0.9
3,638,991 - -0.4
3,639,043 - +0.2
3,639,052 - +0.1
3,639,052 - -1.3
3,639,366 + IAI46_17320 0.36 -0.3
3,639,367 - IAI46_17320 0.36 -1.5
3,639,402 + IAI46_17320 0.39 +1.1
3,639,416 - IAI46_17320 0.40 -0.4
3,639,453 - IAI46_17320 0.43 +0.4
3,639,457 - IAI46_17320 0.44 -0.6
3,639,496 - IAI46_17320 0.47 -0.1
3,639,626 - IAI46_17320 0.59 +0.7
3,639,644 - IAI46_17320 0.61 +0.4
3,639,644 - IAI46_17320 0.61 +0.1
3,639,654 + IAI46_17320 0.62 +0.4
3,639,748 + IAI46_17320 0.70 +0.7
3,639,749 - IAI46_17320 0.71 -0.3
3,639,923 + IAI46_17320 0.86 +0.3
3,639,924 - IAI46_17320 0.86 -0.9
3,639,924 - IAI46_17320 0.86 +0.8
3,639,976 + -0.6
3,639,976 + +0.2
3,639,977 - +0.4
3,639,978 + -0.3
3,640,009 - -1.0
3,640,027 + +0.9
3,640,028 - -0.1
3,640,030 - -0.4
3,640,371 + IAI46_17325 0.30 +1.0
3,640,371 + IAI46_17325 0.30 +0.7
3,640,372 - IAI46_17325 0.30 -0.0
3,640,569 + IAI46_17325 0.49 +1.1
3,640,569 + IAI46_17325 0.49 +0.7
3,640,582 + IAI46_17325 0.50 +0.1
3,640,663 + IAI46_17325 0.58 -0.0
3,640,761 + IAI46_17325 0.68 -1.2
3,640,767 + IAI46_17325 0.68 +0.3
3,640,768 - IAI46_17325 0.68 -0.0
3,640,768 - IAI46_17325 0.68 +0.2
3,640,811 + IAI46_17325 0.72 +0.2
3,640,811 + IAI46_17325 0.72 +0.0
3,640,811 + IAI46_17325 0.72 -0.9
3,640,811 + IAI46_17325 0.72 +0.3
3,640,811 + IAI46_17325 0.72 +0.8
3,640,811 + IAI46_17325 0.72 -0.2
3,640,811 + IAI46_17325 0.72 +0.0
3,640,812 - IAI46_17325 0.73 -0.7
3,640,812 - IAI46_17325 0.73 +0.5
3,640,812 - IAI46_17325 0.73 +0.4
3,640,823 + IAI46_17325 0.74 +0.4

Or see this region's nucleotide sequence