Strain Fitness in Serratia liquefaciens MT49 around IAI46_16595

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16590 and IAI46_16595 are separated by 7 nucleotidesIAI46_16595 and IAI46_16600 are separated by 218 nucleotides IAI46_16590: IAI46_16590 - hypothetical protein, at 3,476,548 to 3,477,354 _16590 IAI46_16595: IAI46_16595 - phosphatase PAP2 family protein, at 3,477,362 to 3,478,189 _16595 IAI46_16600: IAI46_16600 - DUF1254 domain-containing protein, at 3,478,408 to 3,479,430 _16600 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -1 0 1 2at 3476.598 kb on - strandat 3476.598 kb on - strandat 3476.769 kb on - strand, within IAI46_16590at 3476.798 kb on - strand, within IAI46_16590at 3476.928 kb on + strand, within IAI46_16590at 3476.928 kb on + strand, within IAI46_16590at 3476.929 kb on - strand, within IAI46_16590at 3476.929 kb on - strand, within IAI46_16590at 3476.929 kb on - strand, within IAI46_16590at 3476.929 kb on - strand, within IAI46_16590at 3476.931 kb on - strand, within IAI46_16590at 3477.030 kb on - strand, within IAI46_16590at 3477.187 kb on + strand, within IAI46_16590at 3477.187 kb on + strand, within IAI46_16590at 3477.188 kb on - strand, within IAI46_16590at 3477.188 kb on - strand, within IAI46_16590at 3477.191 kb on + strand, within IAI46_16590at 3477.191 kb on + strand, within IAI46_16590at 3477.192 kb on - strand, within IAI46_16590at 3477.192 kb on - strand, within IAI46_16590at 3477.192 kb on - strand, within IAI46_16590at 3477.241 kb on + strand, within IAI46_16590at 3477.286 kb on + strandat 3477.370 kb on + strandat 3477.371 kb on - strandat 3477.476 kb on - strand, within IAI46_16595at 3477.765 kb on + strand, within IAI46_16595at 3477.766 kb on - strand, within IAI46_16595at 3477.766 kb on - strand, within IAI46_16595at 3477.766 kb on - strand, within IAI46_16595at 3477.783 kb on + strand, within IAI46_16595at 3477.784 kb on - strand, within IAI46_16595at 3477.823 kb on + strand, within IAI46_16595at 3477.823 kb on + strand, within IAI46_16595at 3477.824 kb on - strand, within IAI46_16595at 3478.032 kb on - strand, within IAI46_16595at 3478.062 kb on + strand, within IAI46_16595at 3478.165 kb on - strandat 3478.165 kb on - strandat 3478.166 kb on + strandat 3478.166 kb on + strandat 3478.167 kb on - strandat 3478.167 kb on - strandat 3478.167 kb on - strandat 3478.167 kb on - strandat 3478.336 kb on + strandat 3478.464 kb on - strandat 3478.479 kb on - strandat 3478.582 kb on - strand, within IAI46_16600at 3478.592 kb on + strand, within IAI46_16600at 3478.633 kb on - strand, within IAI46_16600at 3478.634 kb on + strand, within IAI46_16600at 3478.688 kb on + strand, within IAI46_16600at 3478.731 kb on - strand, within IAI46_16600at 3478.828 kb on - strand, within IAI46_16600at 3478.829 kb on + strand, within IAI46_16600at 3478.830 kb on - strand, within IAI46_16600at 3478.833 kb on + strand, within IAI46_16600at 3478.954 kb on + strand, within IAI46_16600at 3478.954 kb on + strand, within IAI46_16600at 3478.955 kb on - strand, within IAI46_16600at 3478.955 kb on - strand, within IAI46_16600at 3478.955 kb on - strand, within IAI46_16600at 3478.961 kb on - strand, within IAI46_16600at 3478.961 kb on - strand, within IAI46_16600at 3478.961 kb on - strand, within IAI46_16600at 3479.021 kb on + strand, within IAI46_16600at 3479.084 kb on - strand, within IAI46_16600at 3479.084 kb on - strand, within IAI46_16600at 3479.088 kb on - strand, within IAI46_16600

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,476,598 - +0.6
3,476,598 - -0.5
3,476,769 - IAI46_16590 0.27 +0.5
3,476,798 - IAI46_16590 0.31 +0.6
3,476,928 + IAI46_16590 0.47 +1.5
3,476,928 + IAI46_16590 0.47 +0.5
3,476,929 - IAI46_16590 0.47 +0.8
3,476,929 - IAI46_16590 0.47 +0.3
3,476,929 - IAI46_16590 0.47 -0.5
3,476,929 - IAI46_16590 0.47 -0.1
3,476,931 - IAI46_16590 0.47 -0.4
3,477,030 - IAI46_16590 0.60 -0.2
3,477,187 + IAI46_16590 0.79 +1.8
3,477,187 + IAI46_16590 0.79 -0.1
3,477,188 - IAI46_16590 0.79 -0.1
3,477,188 - IAI46_16590 0.79 -0.5
3,477,191 + IAI46_16590 0.80 +0.7
3,477,191 + IAI46_16590 0.80 -0.4
3,477,192 - IAI46_16590 0.80 -0.1
3,477,192 - IAI46_16590 0.80 -0.5
3,477,192 - IAI46_16590 0.80 +0.4
3,477,241 + IAI46_16590 0.86 -0.2
3,477,286 + +1.2
3,477,370 + +0.8
3,477,371 - +0.8
3,477,476 - IAI46_16595 0.14 +0.2
3,477,765 + IAI46_16595 0.49 -0.6
3,477,766 - IAI46_16595 0.49 +1.2
3,477,766 - IAI46_16595 0.49 +0.0
3,477,766 - IAI46_16595 0.49 +0.2
3,477,783 + IAI46_16595 0.51 +2.1
3,477,784 - IAI46_16595 0.51 -0.1
3,477,823 + IAI46_16595 0.56 +0.2
3,477,823 + IAI46_16595 0.56 +0.5
3,477,824 - IAI46_16595 0.56 +0.4
3,478,032 - IAI46_16595 0.81 -1.0
3,478,062 + IAI46_16595 0.85 +0.3
3,478,165 - +0.9
3,478,165 - -0.7
3,478,166 + -0.8
3,478,166 + +0.4
3,478,167 - +1.1
3,478,167 - -1.1
3,478,167 - +0.9
3,478,167 - +0.5
3,478,336 + -0.9
3,478,464 - +0.5
3,478,479 - +0.8
3,478,582 - IAI46_16600 0.17 +0.0
3,478,592 + IAI46_16600 0.18 +0.7
3,478,633 - IAI46_16600 0.22 +1.4
3,478,634 + IAI46_16600 0.22 -0.1
3,478,688 + IAI46_16600 0.27 -0.2
3,478,731 - IAI46_16600 0.32 +0.2
3,478,828 - IAI46_16600 0.41 +1.8
3,478,829 + IAI46_16600 0.41 -1.0
3,478,830 - IAI46_16600 0.41 +0.7
3,478,833 + IAI46_16600 0.42 +0.2
3,478,954 + IAI46_16600 0.53 +0.5
3,478,954 + IAI46_16600 0.53 +0.4
3,478,955 - IAI46_16600 0.53 -0.7
3,478,955 - IAI46_16600 0.53 +0.7
3,478,955 - IAI46_16600 0.53 -1.5
3,478,961 - IAI46_16600 0.54 +0.6
3,478,961 - IAI46_16600 0.54 -0.8
3,478,961 - IAI46_16600 0.54 -0.1
3,479,021 + IAI46_16600 0.60 +0.0
3,479,084 - IAI46_16600 0.66 +0.0
3,479,084 - IAI46_16600 0.66 -0.0
3,479,088 - IAI46_16600 0.66 +0.5

Or see this region's nucleotide sequence