Strain Fitness in Serratia liquefaciens MT49 around IAI46_15965

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15950 and IAI46_15955 are separated by 12 nucleotidesIAI46_15955 and IAI46_15960 are separated by 5 nucleotidesIAI46_15960 and IAI46_15965 are separated by 163 nucleotidesIAI46_15965 and IAI46_15970 are separated by 121 nucleotidesIAI46_15970 and IAI46_15975 are separated by 47 nucleotidesIAI46_15975 and IAI46_15980 are separated by 61 nucleotides IAI46_15950: IAI46_15950 - flagellar hook assembly protein FlgD, at 3,347,910 to 3,348,587 _15950 IAI46_15955: IAI46_15955 - flagellar basal body rod protein FlgC, at 3,348,600 to 3,349,004 _15955 IAI46_15960: IAI46_15960 - flagellar basal body rod protein FlgB, at 3,349,010 to 3,349,423 _15960 IAI46_15965: IAI46_15965 - flagellar basal body P-ring formation protein FlgA, at 3,349,587 to 3,350,240 _15965 IAI46_15970: IAI46_15970 - anti-sigma-28 factor FlgM, at 3,350,362 to 3,350,688 _15970 IAI46_15975: IAI46_15975 - flagellar export chaperone FlgN, at 3,350,736 to 3,351,170 _15975 IAI46_15980: IAI46_15980 - translesion error-prone DNA polymerase V subunit UmuC, at 3,351,232 to 3,352,494 _15980 Position (kb) 3349 3350 3351Strain fitness (log2 ratio) -2 -1 0 1 2at 3348.671 kb on - strand, within IAI46_15955at 3348.723 kb on - strand, within IAI46_15955at 3348.736 kb on + strand, within IAI46_15955at 3348.736 kb on + strand, within IAI46_15955at 3348.736 kb on + strand, within IAI46_15955at 3348.773 kb on - strand, within IAI46_15955at 3349.012 kb on - strandat 3349.022 kb on + strandat 3349.023 kb on - strandat 3349.077 kb on + strand, within IAI46_15960at 3349.077 kb on + strand, within IAI46_15960at 3349.078 kb on - strand, within IAI46_15960at 3349.208 kb on - strand, within IAI46_15960at 3349.462 kb on - strandat 3349.516 kb on + strandat 3349.517 kb on - strandat 3349.550 kb on + strandat 3349.551 kb on - strandat 3349.709 kb on + strand, within IAI46_15965at 3349.799 kb on + strand, within IAI46_15965at 3349.799 kb on + strand, within IAI46_15965at 3349.838 kb on + strand, within IAI46_15965at 3349.869 kb on + strand, within IAI46_15965at 3349.932 kb on - strand, within IAI46_15965at 3350.013 kb on - strand, within IAI46_15965at 3350.112 kb on - strand, within IAI46_15965at 3350.175 kb on - strandat 3350.201 kb on + strandat 3350.203 kb on + strandat 3350.318 kb on - strandat 3350.367 kb on + strandat 3350.544 kb on + strand, within IAI46_15970at 3350.699 kb on - strandat 3350.898 kb on + strand, within IAI46_15975at 3350.898 kb on + strand, within IAI46_15975at 3350.899 kb on - strand, within IAI46_15975at 3350.899 kb on - strand, within IAI46_15975at 3350.992 kb on + strand, within IAI46_15975at 3351.032 kb on + strand, within IAI46_15975at 3351.032 kb on + strand, within IAI46_15975at 3351.112 kb on - strand, within IAI46_15975at 3351.189 kb on + strandat 3351.189 kb on + strandat 3351.190 kb on - strandat 3351.190 kb on - strandat 3351.190 kb on - strandat 3351.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,348,671 - IAI46_15955 0.18 +0.2
3,348,723 - IAI46_15955 0.30 +0.2
3,348,736 + IAI46_15955 0.34 +0.8
3,348,736 + IAI46_15955 0.34 +0.2
3,348,736 + IAI46_15955 0.34 +0.8
3,348,773 - IAI46_15955 0.43 +0.3
3,349,012 - +0.4
3,349,022 + +0.2
3,349,023 - -0.6
3,349,077 + IAI46_15960 0.16 -0.9
3,349,077 + IAI46_15960 0.16 +0.1
3,349,078 - IAI46_15960 0.16 +1.3
3,349,208 - IAI46_15960 0.48 -0.5
3,349,462 - +0.4
3,349,516 + +0.1
3,349,517 - -2.0
3,349,550 + -1.0
3,349,551 - -0.6
3,349,709 + IAI46_15965 0.19 -2.0
3,349,799 + IAI46_15965 0.32 +0.4
3,349,799 + IAI46_15965 0.32 +0.4
3,349,838 + IAI46_15965 0.38 +1.4
3,349,869 + IAI46_15965 0.43 -0.0
3,349,932 - IAI46_15965 0.53 +0.1
3,350,013 - IAI46_15965 0.65 +0.5
3,350,112 - IAI46_15965 0.80 +1.9
3,350,175 - +0.5
3,350,201 + +0.6
3,350,203 + +0.3
3,350,318 - -0.6
3,350,367 + -0.6
3,350,544 + IAI46_15970 0.56 +0.9
3,350,699 - -0.8
3,350,898 + IAI46_15975 0.37 -0.3
3,350,898 + IAI46_15975 0.37 +0.2
3,350,899 - IAI46_15975 0.37 +0.2
3,350,899 - IAI46_15975 0.37 -0.9
3,350,992 + IAI46_15975 0.59 -0.4
3,351,032 + IAI46_15975 0.68 -1.2
3,351,032 + IAI46_15975 0.68 +2.2
3,351,112 - IAI46_15975 0.86 +0.7
3,351,189 + +0.0
3,351,189 + -0.3
3,351,190 - -1.5
3,351,190 - +0.0
3,351,190 - +0.1
3,351,190 - +0.4

Or see this region's nucleotide sequence