Strain Fitness in Serratia liquefaciens MT49 around IAI46_15805

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15795 and IAI46_15800 are separated by 27 nucleotidesIAI46_15800 and IAI46_15805 overlap by 1 nucleotidesIAI46_15805 and IAI46_15810 are separated by 311 nucleotides IAI46_15795: IAI46_15795 - flagellar filament capping protein FliD, at 3,317,902 to 3,319,299 _15795 IAI46_15800: IAI46_15800 - flagellar export chaperone FliS, at 3,319,327 to 3,319,737 _15800 IAI46_15805: IAI46_15805 - flagella biosynthesis regulatory protein FliT, at 3,319,737 to 3,320,105 _15805 IAI46_15810: IAI46_15810 - helix-turn-helix transcriptional regulator, at 3,320,417 to 3,321,283 _15810 Position (kb) 3319 3320 3321Strain fitness (log2 ratio) -2 -1 0 1at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.759 kb on + strand, within IAI46_15795at 3318.760 kb on - strand, within IAI46_15795at 3318.780 kb on + strand, within IAI46_15795at 3318.796 kb on + strand, within IAI46_15795at 3318.855 kb on + strand, within IAI46_15795at 3318.886 kb on - strand, within IAI46_15795at 3319.147 kb on - strand, within IAI46_15795at 3319.147 kb on - strand, within IAI46_15795at 3319.207 kb on - strandat 3319.217 kb on - strandat 3319.219 kb on - strandat 3319.297 kb on + strandat 3319.330 kb on + strandat 3319.330 kb on + strandat 3319.330 kb on + strandat 3319.330 kb on + strandat 3319.331 kb on - strandat 3319.331 kb on - strandat 3319.331 kb on - strandat 3319.354 kb on + strandat 3319.516 kb on - strand, within IAI46_15800at 3319.592 kb on - strand, within IAI46_15800at 3319.592 kb on - strand, within IAI46_15800at 3319.597 kb on + strand, within IAI46_15800at 3319.597 kb on + strand, within IAI46_15800at 3319.598 kb on - strand, within IAI46_15800at 3319.598 kb on - strand, within IAI46_15800at 3319.598 kb on - strand, within IAI46_15800at 3319.599 kb on + strand, within IAI46_15800at 3319.600 kb on - strand, within IAI46_15800at 3319.600 kb on - strand, within IAI46_15800at 3319.678 kb on - strand, within IAI46_15800at 3319.678 kb on - strand, within IAI46_15800at 3319.711 kb on + strandat 3319.712 kb on - strandat 3319.735 kb on + strandat 3319.779 kb on + strand, within IAI46_15805at 3319.779 kb on + strand, within IAI46_15805at 3319.779 kb on + strand, within IAI46_15805at 3319.780 kb on - strand, within IAI46_15805at 3319.782 kb on - strand, within IAI46_15805at 3319.854 kb on + strand, within IAI46_15805at 3319.854 kb on + strand, within IAI46_15805at 3319.934 kb on + strand, within IAI46_15805at 3320.052 kb on + strand, within IAI46_15805at 3320.134 kb on + strandat 3320.139 kb on - strandat 3320.151 kb on + strandat 3320.152 kb on - strandat 3320.152 kb on - strandat 3320.155 kb on - strandat 3320.176 kb on - strandat 3320.198 kb on - strandat 3320.264 kb on - strandat 3320.317 kb on - strandat 3320.378 kb on + strandat 3320.391 kb on - strandat 3320.394 kb on + strandat 3320.394 kb on + strandat 3320.395 kb on - strandat 3320.395 kb on - strandat 3320.395 kb on - strandat 3320.522 kb on + strand, within IAI46_15810at 3320.523 kb on - strand, within IAI46_15810at 3320.754 kb on + strand, within IAI46_15810at 3320.755 kb on - strand, within IAI46_15810at 3320.865 kb on + strand, within IAI46_15810at 3320.931 kb on + strand, within IAI46_15810at 3320.931 kb on + strand, within IAI46_15810at 3321.052 kb on + strand, within IAI46_15810at 3321.063 kb on + strand, within IAI46_15810

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,318,757 + IAI46_15795 0.61 +0.8
3,318,757 + IAI46_15795 0.61 -1.0
3,318,757 + IAI46_15795 0.61 +0.3
3,318,757 + IAI46_15795 0.61 +0.5
3,318,757 + IAI46_15795 0.61 -0.3
3,318,757 + IAI46_15795 0.61 +0.3
3,318,758 - IAI46_15795 0.61 -1.8
3,318,758 - IAI46_15795 0.61 -1.5
3,318,758 - IAI46_15795 0.61 -0.3
3,318,758 - IAI46_15795 0.61 +0.4
3,318,758 - IAI46_15795 0.61 -0.2
3,318,759 + IAI46_15795 0.61 +1.4
3,318,760 - IAI46_15795 0.61 +0.6
3,318,780 + IAI46_15795 0.63 +1.2
3,318,796 + IAI46_15795 0.64 -0.5
3,318,855 + IAI46_15795 0.68 -0.3
3,318,886 - IAI46_15795 0.70 +0.2
3,319,147 - IAI46_15795 0.89 -1.8
3,319,147 - IAI46_15795 0.89 +0.4
3,319,207 - -0.2
3,319,217 - +0.3
3,319,219 - -0.9
3,319,297 + -0.0
3,319,330 + -0.1
3,319,330 + -0.3
3,319,330 + +0.7
3,319,330 + -0.2
3,319,331 - -0.9
3,319,331 - -0.5
3,319,331 - -1.0
3,319,354 + -0.2
3,319,516 - IAI46_15800 0.46 +0.2
3,319,592 - IAI46_15800 0.64 -0.1
3,319,592 - IAI46_15800 0.64 -0.2
3,319,597 + IAI46_15800 0.66 +0.2
3,319,597 + IAI46_15800 0.66 -1.2
3,319,598 - IAI46_15800 0.66 +0.6
3,319,598 - IAI46_15800 0.66 -0.9
3,319,598 - IAI46_15800 0.66 -0.2
3,319,599 + IAI46_15800 0.66 +0.4
3,319,600 - IAI46_15800 0.66 +0.5
3,319,600 - IAI46_15800 0.66 -1.2
3,319,678 - IAI46_15800 0.85 -0.3
3,319,678 - IAI46_15800 0.85 -0.4
3,319,711 + -2.2
3,319,712 - -2.2
3,319,735 + +0.5
3,319,779 + IAI46_15805 0.11 -0.2
3,319,779 + IAI46_15805 0.11 +0.2
3,319,779 + IAI46_15805 0.11 -0.4
3,319,780 - IAI46_15805 0.12 -0.9
3,319,782 - IAI46_15805 0.12 +0.0
3,319,854 + IAI46_15805 0.32 +0.3
3,319,854 + IAI46_15805 0.32 +0.0
3,319,934 + IAI46_15805 0.53 -0.4
3,320,052 + IAI46_15805 0.85 +0.1
3,320,134 + -0.5
3,320,139 - -1.4
3,320,151 + +1.2
3,320,152 - -0.5
3,320,152 - +0.7
3,320,155 - +1.3
3,320,176 - +0.1
3,320,198 - -0.1
3,320,264 - -0.2
3,320,317 - +0.5
3,320,378 + +0.0
3,320,391 - +0.7
3,320,394 + -0.3
3,320,394 + -1.6
3,320,395 - -1.4
3,320,395 - +0.1
3,320,395 - -0.9
3,320,522 + IAI46_15810 0.12 -0.9
3,320,523 - IAI46_15810 0.12 +0.4
3,320,754 + IAI46_15810 0.39 -0.3
3,320,755 - IAI46_15810 0.39 +0.8
3,320,865 + IAI46_15810 0.52 -0.9
3,320,931 + IAI46_15810 0.59 +0.3
3,320,931 + IAI46_15810 0.59 -1.1
3,321,052 + IAI46_15810 0.73 -0.1
3,321,063 + IAI46_15810 0.75 +0.4

Or see this region's nucleotide sequence