Strain Fitness in Serratia liquefaciens MT49 around IAI46_15555

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15545 and IAI46_15550 overlap by 4 nucleotidesIAI46_15550 and IAI46_15555 are separated by 1 nucleotidesIAI46_15555 and IAI46_15560 are separated by 1 nucleotides IAI46_15545: IAI46_15545 - carbohydrate-binding protein CenC, at 3,256,923 to 3,258,809 _15545 IAI46_15550: IAI46_15550 - glycosyltransferase family 2 protein, at 3,258,806 to 3,259,549 _15550 IAI46_15555: IAI46_15555 - glycosyltransferase family 4 protein, at 3,259,551 to 3,260,612 _15555 IAI46_15560: IAI46_15560 - glycosyltransferase family 2 protein, at 3,260,614 to 3,261,519 _15560 Position (kb) 3259 3260 3261Strain fitness (log2 ratio) -2 -1 0 1 2at 3258.793 kb on - strandat 3258.831 kb on + strandat 3258.837 kb on + strandat 3258.837 kb on + strandat 3258.853 kb on - strandat 3258.892 kb on - strand, within IAI46_15550at 3258.893 kb on + strand, within IAI46_15550at 3258.894 kb on - strand, within IAI46_15550at 3258.894 kb on - strand, within IAI46_15550at 3258.894 kb on - strand, within IAI46_15550at 3259.033 kb on - strand, within IAI46_15550at 3259.091 kb on - strand, within IAI46_15550at 3259.132 kb on + strand, within IAI46_15550at 3259.133 kb on - strand, within IAI46_15550at 3259.135 kb on - strand, within IAI46_15550at 3259.198 kb on - strand, within IAI46_15550at 3259.198 kb on - strand, within IAI46_15550at 3259.198 kb on - strand, within IAI46_15550at 3259.222 kb on - strand, within IAI46_15550at 3259.241 kb on - strand, within IAI46_15550at 3259.301 kb on - strand, within IAI46_15550at 3259.302 kb on + strand, within IAI46_15550at 3259.303 kb on - strand, within IAI46_15550at 3259.374 kb on + strand, within IAI46_15550at 3259.446 kb on + strand, within IAI46_15550at 3259.465 kb on - strand, within IAI46_15550at 3259.590 kb on - strandat 3259.845 kb on + strand, within IAI46_15555at 3259.846 kb on - strand, within IAI46_15555at 3260.052 kb on + strand, within IAI46_15555at 3260.255 kb on - strand, within IAI46_15555at 3260.255 kb on - strand, within IAI46_15555at 3260.318 kb on - strand, within IAI46_15555at 3260.364 kb on + strand, within IAI46_15555at 3260.365 kb on - strand, within IAI46_15555at 3260.372 kb on - strand, within IAI46_15555at 3260.432 kb on + strand, within IAI46_15555at 3260.433 kb on - strand, within IAI46_15555at 3260.823 kb on + strand, within IAI46_15560at 3260.824 kb on - strand, within IAI46_15560at 3260.825 kb on + strand, within IAI46_15560at 3260.846 kb on + strand, within IAI46_15560at 3260.846 kb on + strand, within IAI46_15560at 3260.997 kb on - strand, within IAI46_15560at 3261.003 kb on - strand, within IAI46_15560at 3261.117 kb on + strand, within IAI46_15560at 3261.220 kb on - strand, within IAI46_15560at 3261.222 kb on + strand, within IAI46_15560at 3261.224 kb on + strand, within IAI46_15560at 3261.225 kb on - strand, within IAI46_15560at 3261.232 kb on - strand, within IAI46_15560at 3261.315 kb on + strand, within IAI46_15560at 3261.375 kb on + strand, within IAI46_15560at 3261.461 kb on - strandat 3261.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,258,793 - +2.0
3,258,831 + +0.2
3,258,837 + -0.2
3,258,837 + -0.6
3,258,853 - +0.0
3,258,892 - IAI46_15550 0.12 +0.3
3,258,893 + IAI46_15550 0.12 -0.5
3,258,894 - IAI46_15550 0.12 -1.1
3,258,894 - IAI46_15550 0.12 -0.3
3,258,894 - IAI46_15550 0.12 +0.0
3,259,033 - IAI46_15550 0.31 +0.3
3,259,091 - IAI46_15550 0.38 -0.9
3,259,132 + IAI46_15550 0.44 +1.6
3,259,133 - IAI46_15550 0.44 +0.3
3,259,135 - IAI46_15550 0.44 +0.2
3,259,198 - IAI46_15550 0.53 -0.5
3,259,198 - IAI46_15550 0.53 +0.5
3,259,198 - IAI46_15550 0.53 +1.3
3,259,222 - IAI46_15550 0.56 +0.9
3,259,241 - IAI46_15550 0.58 +0.3
3,259,301 - IAI46_15550 0.67 +0.9
3,259,302 + IAI46_15550 0.67 +1.5
3,259,303 - IAI46_15550 0.67 +0.3
3,259,374 + IAI46_15550 0.76 -0.5
3,259,446 + IAI46_15550 0.86 +0.5
3,259,465 - IAI46_15550 0.89 +0.3
3,259,590 - +0.3
3,259,845 + IAI46_15555 0.28 -0.7
3,259,846 - IAI46_15555 0.28 +1.0
3,260,052 + IAI46_15555 0.47 +0.5
3,260,255 - IAI46_15555 0.66 -0.9
3,260,255 - IAI46_15555 0.66 -0.7
3,260,318 - IAI46_15555 0.72 -0.1
3,260,364 + IAI46_15555 0.77 +0.9
3,260,365 - IAI46_15555 0.77 -0.2
3,260,372 - IAI46_15555 0.77 -1.0
3,260,432 + IAI46_15555 0.83 -0.2
3,260,433 - IAI46_15555 0.83 +0.7
3,260,823 + IAI46_15560 0.23 -0.8
3,260,824 - IAI46_15560 0.23 -0.0
3,260,825 + IAI46_15560 0.23 -0.9
3,260,846 + IAI46_15560 0.26 +0.3
3,260,846 + IAI46_15560 0.26 +0.2
3,260,997 - IAI46_15560 0.42 -0.7
3,261,003 - IAI46_15560 0.43 -0.0
3,261,117 + IAI46_15560 0.56 +1.1
3,261,220 - IAI46_15560 0.67 -1.0
3,261,222 + IAI46_15560 0.67 +0.6
3,261,224 + IAI46_15560 0.67 +0.6
3,261,225 - IAI46_15560 0.67 -2.4
3,261,232 - IAI46_15560 0.68 -0.2
3,261,315 + IAI46_15560 0.77 -0.1
3,261,375 + IAI46_15560 0.84 +0.9
3,261,461 - -0.9
3,261,535 + -0.7

Or see this region's nucleotide sequence