Strain Fitness in Serratia liquefaciens MT49 around IAI46_15470

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15465 and IAI46_15470 overlap by 4 nucleotidesIAI46_15470 and IAI46_15475 are separated by 441 nucleotides IAI46_15465: IAI46_15465 - NAD(P)-dependent oxidoreductase, at 3,236,763 to 3,237,779 _15465 IAI46_15470: IAI46_15470 - ketoacyl-ACP synthase III, at 3,237,776 to 3,238,783 _15470 IAI46_15475: IAI46_15475 - tyrosine-type recombinase/integrase, at 3,239,225 to 3,239,836 _15475 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -2 -1 0 1 2at 3236.893 kb on + strand, within IAI46_15465at 3236.894 kb on - strand, within IAI46_15465at 3236.909 kb on + strand, within IAI46_15465at 3236.909 kb on + strand, within IAI46_15465at 3236.909 kb on + strand, within IAI46_15465at 3236.983 kb on - strand, within IAI46_15465at 3237.011 kb on - strand, within IAI46_15465at 3237.011 kb on - strand, within IAI46_15465at 3237.011 kb on - strand, within IAI46_15465at 3237.292 kb on + strand, within IAI46_15465at 3237.293 kb on - strand, within IAI46_15465at 3237.329 kb on + strand, within IAI46_15465at 3237.329 kb on + strand, within IAI46_15465at 3237.330 kb on - strand, within IAI46_15465at 3237.361 kb on + strand, within IAI46_15465at 3237.509 kb on + strand, within IAI46_15465at 3237.509 kb on + strand, within IAI46_15465at 3237.510 kb on - strand, within IAI46_15465at 3237.510 kb on - strand, within IAI46_15465at 3237.576 kb on - strand, within IAI46_15465at 3237.576 kb on - strand, within IAI46_15465at 3237.788 kb on + strandat 3237.924 kb on + strand, within IAI46_15470at 3237.928 kb on + strand, within IAI46_15470at 3237.929 kb on - strand, within IAI46_15470at 3237.929 kb on - strand, within IAI46_15470at 3237.929 kb on - strand, within IAI46_15470at 3237.970 kb on + strand, within IAI46_15470at 3237.970 kb on + strand, within IAI46_15470at 3237.971 kb on - strand, within IAI46_15470at 3237.971 kb on - strand, within IAI46_15470at 3238.005 kb on - strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.351 kb on + strand, within IAI46_15470at 3238.402 kb on - strand, within IAI46_15470at 3238.430 kb on - strand, within IAI46_15470at 3238.469 kb on - strand, within IAI46_15470at 3238.474 kb on + strand, within IAI46_15470at 3238.755 kb on - strandat 3238.772 kb on - strandat 3238.772 kb on - strandat 3238.776 kb on - strandat 3238.887 kb on + strandat 3238.887 kb on + strandat 3238.888 kb on - strandat 3238.888 kb on - strandat 3238.889 kb on + strandat 3238.915 kb on - strandat 3238.978 kb on - strandat 3239.000 kb on + strandat 3239.028 kb on + strandat 3239.078 kb on + strandat 3239.144 kb on + strandat 3239.145 kb on - strandat 3239.145 kb on - strandat 3239.145 kb on - strandat 3239.145 kb on - strandat 3239.372 kb on - strand, within IAI46_15475at 3239.374 kb on + strand, within IAI46_15475at 3239.417 kb on + strand, within IAI46_15475at 3239.585 kb on + strand, within IAI46_15475at 3239.644 kb on + strand, within IAI46_15475at 3239.644 kb on + strand, within IAI46_15475at 3239.645 kb on - strand, within IAI46_15475at 3239.712 kb on - strand, within IAI46_15475at 3239.737 kb on + strand, within IAI46_15475at 3239.737 kb on + strand, within IAI46_15475at 3239.747 kb on + strand, within IAI46_15475at 3239.748 kb on - strand, within IAI46_15475

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,236,893 + IAI46_15465 0.13 +0.2
3,236,894 - IAI46_15465 0.13 -0.1
3,236,909 + IAI46_15465 0.14 -0.2
3,236,909 + IAI46_15465 0.14 -1.0
3,236,909 + IAI46_15465 0.14 +0.3
3,236,983 - IAI46_15465 0.22 +1.1
3,237,011 - IAI46_15465 0.24 +0.1
3,237,011 - IAI46_15465 0.24 -0.3
3,237,011 - IAI46_15465 0.24 -0.5
3,237,292 + IAI46_15465 0.52 +0.0
3,237,293 - IAI46_15465 0.52 +1.3
3,237,329 + IAI46_15465 0.56 +0.0
3,237,329 + IAI46_15465 0.56 -0.2
3,237,330 - IAI46_15465 0.56 +1.0
3,237,361 + IAI46_15465 0.59 +0.1
3,237,509 + IAI46_15465 0.73 -1.0
3,237,509 + IAI46_15465 0.73 -0.4
3,237,510 - IAI46_15465 0.73 -0.1
3,237,510 - IAI46_15465 0.73 -0.2
3,237,576 - IAI46_15465 0.80 -0.2
3,237,576 - IAI46_15465 0.80 +0.3
3,237,788 + -1.5
3,237,924 + IAI46_15470 0.15 -0.6
3,237,928 + IAI46_15470 0.15 -0.1
3,237,929 - IAI46_15470 0.15 -1.1
3,237,929 - IAI46_15470 0.15 +0.5
3,237,929 - IAI46_15470 0.15 -0.5
3,237,970 + IAI46_15470 0.19 -2.0
3,237,970 + IAI46_15470 0.19 -1.6
3,237,971 - IAI46_15470 0.19 +1.8
3,237,971 - IAI46_15470 0.19 +0.0
3,238,005 - IAI46_15470 0.23 +0.3
3,238,111 + IAI46_15470 0.33 +0.2
3,238,111 + IAI46_15470 0.33 -0.0
3,238,111 + IAI46_15470 0.33 +0.1
3,238,111 + IAI46_15470 0.33 -0.6
3,238,351 + IAI46_15470 0.57 -0.0
3,238,402 - IAI46_15470 0.62 +0.4
3,238,430 - IAI46_15470 0.65 +0.0
3,238,469 - IAI46_15470 0.69 +1.0
3,238,474 + IAI46_15470 0.69 +1.1
3,238,755 - +0.1
3,238,772 - -0.4
3,238,772 - +1.0
3,238,776 - +0.3
3,238,887 + -0.2
3,238,887 + -0.7
3,238,888 - +0.3
3,238,888 - +0.4
3,238,889 + -0.6
3,238,915 - +1.0
3,238,978 - +0.7
3,239,000 + +0.2
3,239,028 + -0.2
3,239,078 + -0.8
3,239,144 + +1.0
3,239,145 - +0.5
3,239,145 - -2.2
3,239,145 - -0.1
3,239,145 - +0.3
3,239,372 - IAI46_15475 0.24 +0.6
3,239,374 + IAI46_15475 0.24 +0.3
3,239,417 + IAI46_15475 0.31 -0.3
3,239,585 + IAI46_15475 0.59 -0.2
3,239,644 + IAI46_15475 0.68 -0.2
3,239,644 + IAI46_15475 0.68 +0.6
3,239,645 - IAI46_15475 0.69 +0.5
3,239,712 - IAI46_15475 0.80 +0.3
3,239,737 + IAI46_15475 0.84 -0.2
3,239,737 + IAI46_15475 0.84 +0.9
3,239,747 + IAI46_15475 0.85 +0.5
3,239,748 - IAI46_15475 0.85 +0.5

Or see this region's nucleotide sequence