Strain Fitness in Serratia liquefaciens MT49 around IAI46_15465

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15455 and IAI46_15460 overlap by 4 nucleotidesIAI46_15460 and IAI46_15465 overlap by 8 nucleotidesIAI46_15465 and IAI46_15470 overlap by 4 nucleotides IAI46_15455: IAI46_15455 - CoF synthetase, at 3,234,681 to 3,235,967 _15455 IAI46_15460: IAI46_15460 - MBL fold metallo-hydrolase, at 3,235,964 to 3,236,770 _15460 IAI46_15465: IAI46_15465 - NAD(P)-dependent oxidoreductase, at 3,236,763 to 3,237,779 _15465 IAI46_15470: IAI46_15470 - ketoacyl-ACP synthase III, at 3,237,776 to 3,238,783 _15470 Position (kb) 3236 3237 3238Strain fitness (log2 ratio) -2 -1 0 1 2at 3235.820 kb on + strand, within IAI46_15455at 3235.820 kb on + strand, within IAI46_15455at 3235.821 kb on - strand, within IAI46_15455at 3235.821 kb on - strand, within IAI46_15455at 3235.835 kb on - strand, within IAI46_15455at 3235.888 kb on + strandat 3235.889 kb on - strandat 3235.939 kb on + strandat 3235.948 kb on - strandat 3235.967 kb on + strandat 3235.967 kb on + strandat 3236.013 kb on + strandat 3236.014 kb on - strandat 3236.046 kb on + strand, within IAI46_15460at 3236.244 kb on + strand, within IAI46_15460at 3236.245 kb on - strand, within IAI46_15460at 3236.245 kb on - strand, within IAI46_15460at 3236.245 kb on - strand, within IAI46_15460at 3236.601 kb on + strand, within IAI46_15460at 3236.601 kb on + strand, within IAI46_15460at 3236.668 kb on - strand, within IAI46_15460at 3236.765 kb on - strandat 3236.893 kb on + strand, within IAI46_15465at 3236.894 kb on - strand, within IAI46_15465at 3236.909 kb on + strand, within IAI46_15465at 3236.909 kb on + strand, within IAI46_15465at 3236.909 kb on + strand, within IAI46_15465at 3236.983 kb on - strand, within IAI46_15465at 3237.011 kb on - strand, within IAI46_15465at 3237.011 kb on - strand, within IAI46_15465at 3237.011 kb on - strand, within IAI46_15465at 3237.292 kb on + strand, within IAI46_15465at 3237.293 kb on - strand, within IAI46_15465at 3237.329 kb on + strand, within IAI46_15465at 3237.329 kb on + strand, within IAI46_15465at 3237.330 kb on - strand, within IAI46_15465at 3237.361 kb on + strand, within IAI46_15465at 3237.509 kb on + strand, within IAI46_15465at 3237.509 kb on + strand, within IAI46_15465at 3237.510 kb on - strand, within IAI46_15465at 3237.510 kb on - strand, within IAI46_15465at 3237.576 kb on - strand, within IAI46_15465at 3237.576 kb on - strand, within IAI46_15465at 3237.788 kb on + strandat 3237.924 kb on + strand, within IAI46_15470at 3237.928 kb on + strand, within IAI46_15470at 3237.929 kb on - strand, within IAI46_15470at 3237.929 kb on - strand, within IAI46_15470at 3237.929 kb on - strand, within IAI46_15470at 3237.970 kb on + strand, within IAI46_15470at 3237.970 kb on + strand, within IAI46_15470at 3237.971 kb on - strand, within IAI46_15470at 3237.971 kb on - strand, within IAI46_15470at 3238.005 kb on - strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.111 kb on + strand, within IAI46_15470at 3238.351 kb on + strand, within IAI46_15470at 3238.402 kb on - strand, within IAI46_15470at 3238.430 kb on - strand, within IAI46_15470at 3238.469 kb on - strand, within IAI46_15470at 3238.474 kb on + strand, within IAI46_15470at 3238.755 kb on - strandat 3238.772 kb on - strandat 3238.772 kb on - strandat 3238.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,235,820 + IAI46_15455 0.89 -1.2
3,235,820 + IAI46_15455 0.89 +1.3
3,235,821 - IAI46_15455 0.89 +1.3
3,235,821 - IAI46_15455 0.89 +1.0
3,235,835 - IAI46_15455 0.90 +0.0
3,235,888 + -0.4
3,235,889 - +1.3
3,235,939 + +1.2
3,235,948 - +0.3
3,235,967 + +0.3
3,235,967 + -1.2
3,236,013 + -2.0
3,236,014 - -0.6
3,236,046 + IAI46_15460 0.10 +0.0
3,236,244 + IAI46_15460 0.35 +0.0
3,236,245 - IAI46_15460 0.35 +0.3
3,236,245 - IAI46_15460 0.35 +0.4
3,236,245 - IAI46_15460 0.35 +0.1
3,236,601 + IAI46_15460 0.79 +0.7
3,236,601 + IAI46_15460 0.79 -1.2
3,236,668 - IAI46_15460 0.87 -0.2
3,236,765 - +0.5
3,236,893 + IAI46_15465 0.13 +0.2
3,236,894 - IAI46_15465 0.13 -0.1
3,236,909 + IAI46_15465 0.14 -0.2
3,236,909 + IAI46_15465 0.14 -1.0
3,236,909 + IAI46_15465 0.14 +0.3
3,236,983 - IAI46_15465 0.22 +1.1
3,237,011 - IAI46_15465 0.24 +0.1
3,237,011 - IAI46_15465 0.24 -0.3
3,237,011 - IAI46_15465 0.24 -0.5
3,237,292 + IAI46_15465 0.52 +0.0
3,237,293 - IAI46_15465 0.52 +1.3
3,237,329 + IAI46_15465 0.56 +0.0
3,237,329 + IAI46_15465 0.56 -0.2
3,237,330 - IAI46_15465 0.56 +1.0
3,237,361 + IAI46_15465 0.59 +0.1
3,237,509 + IAI46_15465 0.73 -1.0
3,237,509 + IAI46_15465 0.73 -0.4
3,237,510 - IAI46_15465 0.73 -0.1
3,237,510 - IAI46_15465 0.73 -0.2
3,237,576 - IAI46_15465 0.80 -0.2
3,237,576 - IAI46_15465 0.80 +0.3
3,237,788 + -1.5
3,237,924 + IAI46_15470 0.15 -0.6
3,237,928 + IAI46_15470 0.15 -0.1
3,237,929 - IAI46_15470 0.15 -1.1
3,237,929 - IAI46_15470 0.15 +0.5
3,237,929 - IAI46_15470 0.15 -0.5
3,237,970 + IAI46_15470 0.19 -2.0
3,237,970 + IAI46_15470 0.19 -1.6
3,237,971 - IAI46_15470 0.19 +1.8
3,237,971 - IAI46_15470 0.19 +0.0
3,238,005 - IAI46_15470 0.23 +0.3
3,238,111 + IAI46_15470 0.33 +0.2
3,238,111 + IAI46_15470 0.33 -0.0
3,238,111 + IAI46_15470 0.33 +0.1
3,238,111 + IAI46_15470 0.33 -0.6
3,238,351 + IAI46_15470 0.57 -0.0
3,238,402 - IAI46_15470 0.62 +0.4
3,238,430 - IAI46_15470 0.65 +0.0
3,238,469 - IAI46_15470 0.69 +1.0
3,238,474 + IAI46_15470 0.69 +1.1
3,238,755 - +0.1
3,238,772 - -0.4
3,238,772 - +1.0
3,238,776 - +0.3

Or see this region's nucleotide sequence