Strain Fitness in Serratia liquefaciens MT49 around IAI46_14795

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14790 and IAI46_14795 are separated by 445 nucleotidesIAI46_14795 and IAI46_14800 are separated by 281 nucleotides IAI46_14790: IAI46_14790 - CoA pyrophosphatase, at 3,131,711 to 3,132,289 _14790 IAI46_14795: IAI46_14795 - L-serine ammonia-lyase, at 3,132,735 to 3,134,099 _14795 IAI46_14800: IAI46_14800 - EAL domain-containing protein, at 3,134,381 to 3,135,997 _14800 Position (kb) 3132 3133 3134 3135Strain fitness (log2 ratio) -2 -1 0 1at 3131.831 kb on - strand, within IAI46_14790at 3131.831 kb on - strand, within IAI46_14790at 3132.161 kb on + strand, within IAI46_14790at 3132.175 kb on + strand, within IAI46_14790at 3132.206 kb on + strand, within IAI46_14790at 3132.206 kb on + strand, within IAI46_14790at 3132.454 kb on - strandat 3132.458 kb on + strandat 3132.595 kb on - strandat 3132.758 kb on + strandat 3132.758 kb on + strandat 3132.789 kb on - strandat 3132.839 kb on + strandat 3132.857 kb on + strandat 3132.857 kb on + strandat 3132.929 kb on + strand, within IAI46_14795at 3133.003 kb on + strand, within IAI46_14795at 3133.004 kb on - strand, within IAI46_14795at 3133.048 kb on + strand, within IAI46_14795at 3133.048 kb on + strand, within IAI46_14795at 3133.048 kb on + strand, within IAI46_14795at 3133.049 kb on - strand, within IAI46_14795at 3133.049 kb on - strand, within IAI46_14795at 3133.150 kb on - strand, within IAI46_14795at 3133.161 kb on + strand, within IAI46_14795at 3133.162 kb on - strand, within IAI46_14795at 3133.165 kb on - strand, within IAI46_14795at 3133.185 kb on - strand, within IAI46_14795at 3133.367 kb on + strand, within IAI46_14795at 3133.367 kb on + strand, within IAI46_14795at 3133.392 kb on - strand, within IAI46_14795at 3133.629 kb on + strand, within IAI46_14795at 3133.633 kb on - strand, within IAI46_14795at 3133.633 kb on - strand, within IAI46_14795at 3133.677 kb on + strand, within IAI46_14795at 3134.020 kb on - strandat 3134.303 kb on + strandat 3134.417 kb on + strandat 3134.455 kb on + strandat 3134.460 kb on + strandat 3134.461 kb on - strandat 3134.461 kb on - strandat 3134.474 kb on + strandat 3134.475 kb on - strandat 3134.698 kb on + strand, within IAI46_14800at 3134.699 kb on - strand, within IAI46_14800at 3134.702 kb on + strand, within IAI46_14800at 3134.703 kb on - strand, within IAI46_14800at 3134.703 kb on - strand, within IAI46_14800at 3134.733 kb on - strand, within IAI46_14800at 3134.746 kb on + strand, within IAI46_14800at 3134.747 kb on - strand, within IAI46_14800at 3134.747 kb on - strand, within IAI46_14800at 3134.851 kb on + strand, within IAI46_14800at 3134.930 kb on + strand, within IAI46_14800at 3134.931 kb on - strand, within IAI46_14800at 3135.027 kb on - strand, within IAI46_14800at 3135.028 kb on + strand, within IAI46_14800

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,131,831 - IAI46_14790 0.21 -0.3
3,131,831 - IAI46_14790 0.21 +0.7
3,132,161 + IAI46_14790 0.78 +0.7
3,132,175 + IAI46_14790 0.80 +1.1
3,132,206 + IAI46_14790 0.85 +0.5
3,132,206 + IAI46_14790 0.85 -0.8
3,132,454 - +1.0
3,132,458 + -0.2
3,132,595 - +0.4
3,132,758 + +0.7
3,132,758 + +0.3
3,132,789 - -1.2
3,132,839 + -2.7
3,132,857 + -0.7
3,132,857 + +0.3
3,132,929 + IAI46_14795 0.14 +0.3
3,133,003 + IAI46_14795 0.20 +0.1
3,133,004 - IAI46_14795 0.20 +0.2
3,133,048 + IAI46_14795 0.23 +0.0
3,133,048 + IAI46_14795 0.23 +0.6
3,133,048 + IAI46_14795 0.23 +0.1
3,133,049 - IAI46_14795 0.23 +0.0
3,133,049 - IAI46_14795 0.23 -0.2
3,133,150 - IAI46_14795 0.30 -0.4
3,133,161 + IAI46_14795 0.31 +0.5
3,133,162 - IAI46_14795 0.31 +0.3
3,133,165 - IAI46_14795 0.32 +0.6
3,133,185 - IAI46_14795 0.33 +1.2
3,133,367 + IAI46_14795 0.46 +0.2
3,133,367 + IAI46_14795 0.46 +0.2
3,133,392 - IAI46_14795 0.48 +1.6
3,133,629 + IAI46_14795 0.65 +0.7
3,133,633 - IAI46_14795 0.66 +0.2
3,133,633 - IAI46_14795 0.66 -0.2
3,133,677 + IAI46_14795 0.69 -0.4
3,134,020 - +0.7
3,134,303 + -0.2
3,134,417 + +0.2
3,134,455 + -0.0
3,134,460 + +1.1
3,134,461 - +0.1
3,134,461 - +0.5
3,134,474 + +1.2
3,134,475 - -0.7
3,134,698 + IAI46_14800 0.20 +1.3
3,134,699 - IAI46_14800 0.20 +1.3
3,134,702 + IAI46_14800 0.20 +0.1
3,134,703 - IAI46_14800 0.20 -0.5
3,134,703 - IAI46_14800 0.20 -0.0
3,134,733 - IAI46_14800 0.22 +0.6
3,134,746 + IAI46_14800 0.23 +0.3
3,134,747 - IAI46_14800 0.23 +0.5
3,134,747 - IAI46_14800 0.23 +0.4
3,134,851 + IAI46_14800 0.29 -0.7
3,134,930 + IAI46_14800 0.34 -2.1
3,134,931 - IAI46_14800 0.34 -0.7
3,135,027 - IAI46_14800 0.40 -0.2
3,135,028 + IAI46_14800 0.40 +0.5

Or see this region's nucleotide sequence