Strain Fitness in Serratia liquefaciens MT49 around IAI46_14545

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_14535 and IAI46_14540 are separated by 208 nucleotidesIAI46_14540 and IAI46_14545 are separated by 101 nucleotidesIAI46_14545 and IAI46_14550 are separated by 80 nucleotides IAI46_14535: IAI46_14535 - long-chain-fatty-acid--CoA ligase FadD, at 3,081,037 to 3,082,725 _14535 IAI46_14540: IAI46_14540 - Slp family lipoprotein, at 3,082,934 to 3,083,524 _14540 IAI46_14545: IAI46_14545 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 3,083,626 to 3,084,327 _14545 IAI46_14550: IAI46_14550 - ATP-dependent DNA helicase, at 3,084,408 to 3,086,312 _14550 Position (kb) 3083 3084 3085Strain fitness (log2 ratio) -1 0 1at 3082.729 kb on - strandat 3082.732 kb on - strandat 3082.753 kb on + strandat 3082.849 kb on + strandat 3082.857 kb on + strandat 3082.876 kb on - strandat 3082.935 kb on + strandat 3082.978 kb on - strandat 3083.015 kb on - strand, within IAI46_14540at 3083.021 kb on - strand, within IAI46_14540at 3083.107 kb on + strand, within IAI46_14540at 3083.119 kb on - strand, within IAI46_14540at 3083.188 kb on + strand, within IAI46_14540at 3083.550 kb on - strandat 3083.617 kb on - strandat 3083.672 kb on + strandat 3084.380 kb on - strandat 3084.380 kb on - strandat 3084.636 kb on + strand, within IAI46_14550at 3084.732 kb on + strand, within IAI46_14550at 3084.733 kb on - strand, within IAI46_14550at 3084.733 kb on - strand, within IAI46_14550at 3084.738 kb on + strand, within IAI46_14550at 3084.739 kb on - strand, within IAI46_14550at 3085.068 kb on - strand, within IAI46_14550at 3085.231 kb on + strand, within IAI46_14550at 3085.231 kb on + strand, within IAI46_14550at 3085.232 kb on - strand, within IAI46_14550at 3085.232 kb on - strand, within IAI46_14550at 3085.289 kb on - strand, within IAI46_14550at 3085.290 kb on + strand, within IAI46_14550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
3,082,729 - +0.5
3,082,732 - +1.0
3,082,753 + -0.7
3,082,849 + +0.3
3,082,857 + -1.1
3,082,876 - -0.5
3,082,935 + -0.3
3,082,978 - -1.4
3,083,015 - IAI46_14540 0.14 +0.1
3,083,021 - IAI46_14540 0.15 -0.5
3,083,107 + IAI46_14540 0.29 -0.7
3,083,119 - IAI46_14540 0.31 -0.5
3,083,188 + IAI46_14540 0.43 +0.1
3,083,550 - -0.9
3,083,617 - +0.4
3,083,672 + +0.3
3,084,380 - -0.5
3,084,380 - +0.5
3,084,636 + IAI46_14550 0.12 -1.3
3,084,732 + IAI46_14550 0.17 -1.2
3,084,733 - IAI46_14550 0.17 +1.0
3,084,733 - IAI46_14550 0.17 +0.8
3,084,738 + IAI46_14550 0.17 -1.1
3,084,739 - IAI46_14550 0.17 +0.7
3,085,068 - IAI46_14550 0.35 +0.8
3,085,231 + IAI46_14550 0.43 -1.6
3,085,231 + IAI46_14550 0.43 -0.2
3,085,232 - IAI46_14550 0.43 +0.8
3,085,232 - IAI46_14550 0.43 -0.1
3,085,289 - IAI46_14550 0.46 -0.5
3,085,290 + IAI46_14550 0.46 -0.1

Or see this region's nucleotide sequence