Strain Fitness in Serratia liquefaciens MT49 around IAI46_14525

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14515 and IAI46_14520 are separated by 25 nucleotidesIAI46_14520 and IAI46_14525 are separated by 3 nucleotidesIAI46_14525 and IAI46_14530 are separated by 233 nucleotides IAI46_14515: IAI46_14515 - septum site-determining protein MinC, at 3,077,780 to 3,078,481 _14515 IAI46_14520: IAI46_14520 - septum site-determining protein MinD, at 3,078,507 to 3,079,319 _14520 IAI46_14525: IAI46_14525 - cell division topological specificity factor MinE, at 3,079,323 to 3,079,592 _14525 IAI46_14530: IAI46_14530 - ribonuclease D, at 3,079,826 to 3,080,947 _14530 Position (kb) 3079 3080Strain fitness (log2 ratio) -1 0 1at 3078.325 kb on + strand, within IAI46_14515at 3078.325 kb on + strand, within IAI46_14515at 3078.416 kb on + strandat 3078.416 kb on + strandat 3078.465 kb on + strandat 3078.474 kb on + strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.955 kb on + strand, within IAI46_14520at 3079.221 kb on + strand, within IAI46_14520at 3079.586 kb on + strandat 3079.608 kb on + strandat 3079.617 kb on + strandat 3079.642 kb on + strandat 3079.732 kb on + strandat 3079.738 kb on - strandat 3079.767 kb on - strandat 3079.776 kb on - strandat 3079.799 kb on + strandat 3079.816 kb on + strandat 3079.817 kb on - strandat 3079.831 kb on - strandat 3079.865 kb on + strandat 3079.866 kb on - strandat 3079.967 kb on + strand, within IAI46_14530at 3080.231 kb on + strand, within IAI46_14530at 3080.350 kb on - strand, within IAI46_14530at 3080.350 kb on - strand, within IAI46_14530at 3080.572 kb on + strand, within IAI46_14530at 3080.573 kb on - strand, within IAI46_14530at 3080.573 kb on - strand, within IAI46_14530at 3080.573 kb on - strand, within IAI46_14530at 3080.573 kb on - strand, within IAI46_14530at 3080.575 kb on - strand, within IAI46_14530

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,078,325 + IAI46_14515 0.78 -0.8
3,078,325 + IAI46_14515 0.78 +0.4
3,078,416 + +1.1
3,078,416 + -0.1
3,078,465 + +0.0
3,078,474 + +0.1
3,078,518 + -0.1
3,078,518 + +0.2
3,078,518 + -0.3
3,078,518 + -0.1
3,078,955 + IAI46_14520 0.55 +0.0
3,079,221 + IAI46_14520 0.88 -0.0
3,079,586 + +0.0
3,079,608 + +0.5
3,079,617 + +0.1
3,079,642 + +0.6
3,079,732 + +0.7
3,079,738 - -0.6
3,079,767 - +0.7
3,079,776 - +0.6
3,079,799 + +0.6
3,079,816 + +0.2
3,079,817 - -0.8
3,079,831 - +0.4
3,079,865 + -1.5
3,079,866 - -0.1
3,079,967 + IAI46_14530 0.13 -0.3
3,080,231 + IAI46_14530 0.36 +1.2
3,080,350 - IAI46_14530 0.47 +0.6
3,080,350 - IAI46_14530 0.47 +0.0
3,080,572 + IAI46_14530 0.66 +0.7
3,080,573 - IAI46_14530 0.67 +0.2
3,080,573 - IAI46_14530 0.67 -0.9
3,080,573 - IAI46_14530 0.67 +0.1
3,080,573 - IAI46_14530 0.67 +0.5
3,080,575 - IAI46_14530 0.67 +0.2

Or see this region's nucleotide sequence