Strain Fitness in Serratia liquefaciens MT49 around IAI46_14265

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14255 and IAI46_14260 are separated by 143 nucleotidesIAI46_14260 and IAI46_14265 are separated by 110 nucleotidesIAI46_14265 and IAI46_14270 are separated by 158 nucleotidesIAI46_14270 and IAI46_14275 are separated by 96 nucleotidesIAI46_14275 and IAI46_14285 are separated by 322 nucleotides IAI46_14255: IAI46_14255 - patatin-like phospholipase RssA, at 3,028,478 to 3,029,383 _14255 IAI46_14260: IAI46_14260 - YchJ family protein, at 3,029,527 to 3,029,991 _14260 IAI46_14265: IAI46_14265 - formyltetrahydrofolate deformylase, at 3,030,102 to 3,030,950 _14265 IAI46_14270: IAI46_14270 - tRNA-Tyr, at 3,031,109 to 3,031,193 _14270 IAI46_14275: IAI46_14275 - tRNA-Tyr, at 3,031,290 to 3,031,374 _14275 IAI46_14285: IAI46_14285 - TIGR00730 family Rossman fold protein, at 3,031,697 to 3,032,269 _14285 Position (kb) 3030 3031Strain fitness (log2 ratio) -2 -1 0 1at 3029.277 kb on - strand, within IAI46_14255at 3029.277 kb on - strand, within IAI46_14255at 3029.277 kb on - strand, within IAI46_14255at 3029.277 kb on - strand, within IAI46_14255at 3029.411 kb on + strandat 3029.431 kb on + strandat 3029.431 kb on + strandat 3029.432 kb on - strandat 3029.432 kb on - strandat 3029.455 kb on + strandat 3029.464 kb on + strandat 3029.464 kb on + strandat 3029.465 kb on - strandat 3029.465 kb on - strandat 3029.465 kb on - strandat 3029.563 kb on + strandat 3029.565 kb on + strandat 3029.566 kb on - strandat 3029.584 kb on + strand, within IAI46_14260at 3029.624 kb on + strand, within IAI46_14260at 3029.624 kb on + strand, within IAI46_14260at 3029.625 kb on - strand, within IAI46_14260at 3029.668 kb on + strand, within IAI46_14260at 3029.669 kb on - strand, within IAI46_14260at 3029.679 kb on + strand, within IAI46_14260at 3029.900 kb on - strand, within IAI46_14260at 3029.902 kb on + strand, within IAI46_14260at 3029.902 kb on + strand, within IAI46_14260at 3029.903 kb on - strand, within IAI46_14260at 3029.905 kb on - strand, within IAI46_14260at 3029.905 kb on - strand, within IAI46_14260at 3030.189 kb on + strand, within IAI46_14265at 3030.189 kb on + strand, within IAI46_14265at 3030.190 kb on - strand, within IAI46_14265at 3030.191 kb on + strand, within IAI46_14265at 3030.191 kb on + strand, within IAI46_14265at 3030.192 kb on - strand, within IAI46_14265at 3030.255 kb on - strand, within IAI46_14265at 3030.347 kb on + strand, within IAI46_14265at 3030.594 kb on + strand, within IAI46_14265at 3030.613 kb on - strand, within IAI46_14265at 3030.615 kb on - strand, within IAI46_14265at 3030.615 kb on - strand, within IAI46_14265at 3030.712 kb on - strand, within IAI46_14265at 3030.762 kb on + strand, within IAI46_14265at 3030.763 kb on - strand, within IAI46_14265at 3030.828 kb on + strand, within IAI46_14265at 3030.828 kb on + strand, within IAI46_14265at 3030.829 kb on - strand, within IAI46_14265at 3030.843 kb on - strand, within IAI46_14265at 3030.895 kb on - strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.922 kb on + strandat 3030.923 kb on - strandat 3030.923 kb on - strandat 3030.923 kb on - strandat 3030.949 kb on - strandat 3031.060 kb on + strandat 3031.061 kb on - strandat 3031.284 kb on + strandat 3031.381 kb on + strandat 3031.381 kb on + strandat 3031.381 kb on + strandat 3031.381 kb on + strandat 3031.526 kb on + strandat 3031.553 kb on - strandat 3031.553 kb on - strandat 3031.553 kb on - strandat 3031.600 kb on - strandat 3031.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,029,277 - IAI46_14255 0.88 +0.7
3,029,277 - IAI46_14255 0.88 -0.8
3,029,277 - IAI46_14255 0.88 +1.5
3,029,277 - IAI46_14255 0.88 +0.7
3,029,411 + -1.5
3,029,431 + +1.0
3,029,431 + -0.1
3,029,432 - +0.0
3,029,432 - +0.8
3,029,455 + -0.5
3,029,464 + -1.0
3,029,464 + +0.9
3,029,465 - +0.1
3,029,465 - +0.3
3,029,465 - -0.4
3,029,563 + +1.5
3,029,565 + -1.2
3,029,566 - +0.5
3,029,584 + IAI46_14260 0.12 +1.1
3,029,624 + IAI46_14260 0.21 -1.8
3,029,624 + IAI46_14260 0.21 +0.2
3,029,625 - IAI46_14260 0.21 +1.1
3,029,668 + IAI46_14260 0.30 -0.3
3,029,669 - IAI46_14260 0.31 -0.2
3,029,679 + IAI46_14260 0.33 +1.2
3,029,900 - IAI46_14260 0.80 +0.4
3,029,902 + IAI46_14260 0.81 +0.6
3,029,902 + IAI46_14260 0.81 +0.6
3,029,903 - IAI46_14260 0.81 -1.0
3,029,905 - IAI46_14260 0.81 -0.1
3,029,905 - IAI46_14260 0.81 +0.1
3,030,189 + IAI46_14265 0.10 +0.8
3,030,189 + IAI46_14265 0.10 +0.7
3,030,190 - IAI46_14265 0.10 -0.7
3,030,191 + IAI46_14265 0.10 +0.8
3,030,191 + IAI46_14265 0.10 -0.3
3,030,192 - IAI46_14265 0.11 +0.9
3,030,255 - IAI46_14265 0.18 +0.4
3,030,347 + IAI46_14265 0.29 +0.9
3,030,594 + IAI46_14265 0.58 +0.3
3,030,613 - IAI46_14265 0.60 -0.7
3,030,615 - IAI46_14265 0.60 -0.3
3,030,615 - IAI46_14265 0.60 +0.6
3,030,712 - IAI46_14265 0.72 -2.3
3,030,762 + IAI46_14265 0.78 +0.7
3,030,763 - IAI46_14265 0.78 -0.4
3,030,828 + IAI46_14265 0.86 -0.3
3,030,828 + IAI46_14265 0.86 +0.3
3,030,829 - IAI46_14265 0.86 +1.1
3,030,843 - IAI46_14265 0.87 +0.3
3,030,895 - +0.4
3,030,916 + +0.5
3,030,916 + +0.2
3,030,916 + +1.2
3,030,922 + +0.1
3,030,923 - +0.3
3,030,923 - -2.6
3,030,923 - +1.0
3,030,949 - +0.2
3,031,060 + -0.7
3,031,061 - +1.3
3,031,284 + +0.3
3,031,381 + +0.8
3,031,381 + +0.1
3,031,381 + +0.8
3,031,381 + -0.2
3,031,526 + +0.6
3,031,553 - +0.1
3,031,553 - -0.8
3,031,553 - -1.5
3,031,600 - -0.0
3,031,657 + +0.4

Or see this region's nucleotide sequence