Strain Fitness in Serratia liquefaciens MT49 around IAI46_13520

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13510 and IAI46_13515 are separated by 12 nucleotidesIAI46_13515 and IAI46_13520 overlap by 11 nucleotidesIAI46_13520 and IAI46_13525 are separated by 205 nucleotides IAI46_13510: IAI46_13510 - GTP-binding protein, at 2,884,834 to 2,886,021 _13510 IAI46_13515: IAI46_13515 - carbonate dehydratase, at 2,886,034 to 2,886,594 _13515 IAI46_13520: IAI46_13520 - GTP cyclohydrolase I FolE2, at 2,886,584 to 2,887,513 _13520 IAI46_13525: IAI46_13525 - peptide ABC transporter substrate-binding protein SapA, at 2,887,719 to 2,889,371 _13525 Position (kb) 2886 2887 2888Strain fitness (log2 ratio) -1 0 1at 2885.741 kb on + strand, within IAI46_13510at 2885.952 kb on + strandat 2886.182 kb on + strand, within IAI46_13515at 2886.183 kb on - strand, within IAI46_13515at 2886.435 kb on + strand, within IAI46_13515at 2886.488 kb on + strand, within IAI46_13515at 2886.586 kb on - strandat 2886.586 kb on - strandat 2886.827 kb on - strand, within IAI46_13520at 2886.899 kb on - strand, within IAI46_13520at 2886.925 kb on + strand, within IAI46_13520at 2887.057 kb on - strand, within IAI46_13520at 2887.123 kb on - strand, within IAI46_13520at 2887.316 kb on + strand, within IAI46_13520at 2887.316 kb on + strand, within IAI46_13520at 2887.316 kb on + strand, within IAI46_13520at 2887.317 kb on - strand, within IAI46_13520at 2887.513 kb on + strandat 2887.514 kb on - strandat 2887.514 kb on - strandat 2887.526 kb on + strandat 2887.527 kb on - strandat 2887.527 kb on - strandat 2887.527 kb on - strandat 2887.530 kb on - strandat 2887.536 kb on - strandat 2888.313 kb on + strand, within IAI46_13525

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,885,741 + IAI46_13510 0.76 +0.3
2,885,952 + -1.6
2,886,182 + IAI46_13515 0.26 -0.6
2,886,183 - IAI46_13515 0.27 +0.9
2,886,435 + IAI46_13515 0.71 +0.7
2,886,488 + IAI46_13515 0.81 +0.6
2,886,586 - -0.6
2,886,586 - +0.3
2,886,827 - IAI46_13520 0.26 -0.9
2,886,899 - IAI46_13520 0.34 +0.9
2,886,925 + IAI46_13520 0.37 -0.1
2,887,057 - IAI46_13520 0.51 +0.3
2,887,123 - IAI46_13520 0.58 +1.1
2,887,316 + IAI46_13520 0.79 +0.8
2,887,316 + IAI46_13520 0.79 +1.5
2,887,316 + IAI46_13520 0.79 +0.5
2,887,317 - IAI46_13520 0.79 -0.3
2,887,513 + -1.1
2,887,514 - +0.3
2,887,514 - +1.7
2,887,526 + +0.5
2,887,527 - +0.8
2,887,527 - +1.2
2,887,527 - +0.3
2,887,530 - -0.3
2,887,536 - +1.3
2,888,313 + IAI46_13525 0.36 -1.5

Or see this region's nucleotide sequence