Strain Fitness in Serratia liquefaciens MT49 around IAI46_12665

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12655 and IAI46_12660 are separated by 85 nucleotidesIAI46_12660 and IAI46_12665 are separated by 5 nucleotidesIAI46_12665 and IAI46_12670 overlap by 29 nucleotides IAI46_12655: IAI46_12655 - LysR family transcriptional regulator, at 2,690,641 to 2,691,537 _12655 IAI46_12660: IAI46_12660 - NAD(P)H-dependent oxidoreductase, at 2,691,623 to 2,692,396 _12660 IAI46_12665: IAI46_12665 - aldehyde dehydrogenase family protein, at 2,692,402 to 2,692,770 _12665 IAI46_12670: IAI46_12670 - MarR family transcriptional regulator, at 2,692,742 to 2,693,707 _12670 Position (kb) 2692 2693Strain fitness (log2 ratio) -1 0 1at 2691.550 kb on - strandat 2691.572 kb on + strandat 2691.589 kb on + strandat 2691.666 kb on + strandat 2691.667 kb on - strandat 2691.859 kb on + strand, within IAI46_12660at 2692.145 kb on - strand, within IAI46_12660at 2692.323 kb on - strandat 2692.388 kb on - strandat 2692.564 kb on + strand, within IAI46_12665at 2692.724 kb on - strand, within IAI46_12665at 2692.739 kb on - strandat 2692.846 kb on - strand, within IAI46_12670at 2693.132 kb on - strand, within IAI46_12670at 2693.169 kb on + strand, within IAI46_12670at 2693.172 kb on + strand, within IAI46_12670at 2693.172 kb on + strand, within IAI46_12670at 2693.293 kb on - strand, within IAI46_12670at 2693.429 kb on - strand, within IAI46_12670at 2693.526 kb on - strand, within IAI46_12670at 2693.722 kb on + strandat 2693.731 kb on - strandat 2693.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,691,550 - +0.2
2,691,572 + +0.3
2,691,589 + +0.4
2,691,666 + +1.2
2,691,667 - +0.3
2,691,859 + IAI46_12660 0.30 +0.3
2,692,145 - IAI46_12660 0.67 +0.5
2,692,323 - -0.2
2,692,388 - +0.7
2,692,564 + IAI46_12665 0.44 +0.2
2,692,724 - IAI46_12665 0.87 +0.2
2,692,739 - -0.3
2,692,846 - IAI46_12670 0.11 +1.3
2,693,132 - IAI46_12670 0.40 +1.2
2,693,169 + IAI46_12670 0.44 +0.2
2,693,172 + IAI46_12670 0.45 +0.1
2,693,172 + IAI46_12670 0.45 -0.2
2,693,293 - IAI46_12670 0.57 +0.3
2,693,429 - IAI46_12670 0.71 -0.8
2,693,526 - IAI46_12670 0.81 +0.6
2,693,722 + -0.0
2,693,731 - -0.2
2,693,752 + -0.3

Or see this region's nucleotide sequence