Strain Fitness in Serratia liquefaciens MT49 around IAI46_12095

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12085 and IAI46_12090 overlap by 4 nucleotidesIAI46_12090 and IAI46_12095 are separated by 16 nucleotidesIAI46_12095 and IAI46_12100 are separated by 17 nucleotides IAI46_12085: IAI46_12085 - amino acid ABC transporter permease, at 2,556,871 to 2,557,788 _12085 IAI46_12090: IAI46_12090 - ABC transporter substrate-binding protein, at 2,557,785 to 2,558,699 _12090 IAI46_12095: IAI46_12095 - LLM class flavin-dependent oxidoreductase, at 2,558,716 to 2,560,053 _12095 IAI46_12100: IAI46_12100 - MmgE/PrpD family protein, at 2,560,071 to 2,561,390 _12100 Position (kb) 2558 2559 2560 2561Strain fitness (log2 ratio) -1 0 1 2at 2557.992 kb on - strand, within IAI46_12090at 2558.023 kb on + strand, within IAI46_12090at 2558.218 kb on + strand, within IAI46_12090at 2558.342 kb on - strand, within IAI46_12090at 2558.480 kb on - strand, within IAI46_12090at 2558.499 kb on - strand, within IAI46_12090at 2558.499 kb on - strand, within IAI46_12090at 2558.525 kb on - strand, within IAI46_12090at 2558.525 kb on - strand, within IAI46_12090at 2558.538 kb on + strand, within IAI46_12090at 2558.539 kb on - strand, within IAI46_12090at 2558.624 kb on - strandat 2558.648 kb on + strandat 2558.648 kb on + strandat 2558.649 kb on - strandat 2558.674 kb on - strandat 2558.786 kb on + strandat 2558.787 kb on - strandat 2558.793 kb on - strandat 2558.822 kb on - strandat 2558.880 kb on + strand, within IAI46_12095at 2558.886 kb on + strand, within IAI46_12095at 2558.886 kb on + strand, within IAI46_12095at 2559.526 kb on + strand, within IAI46_12095at 2559.526 kb on + strand, within IAI46_12095at 2559.526 kb on + strand, within IAI46_12095at 2559.563 kb on + strand, within IAI46_12095at 2559.563 kb on + strand, within IAI46_12095at 2560.019 kb on - strandat 2560.047 kb on + strandat 2560.058 kb on - strandat 2560.069 kb on + strandat 2560.436 kb on - strand, within IAI46_12100at 2560.481 kb on + strand, within IAI46_12100at 2560.482 kb on - strand, within IAI46_12100at 2560.545 kb on - strand, within IAI46_12100at 2560.665 kb on - strand, within IAI46_12100at 2560.927 kb on + strand, within IAI46_12100at 2560.991 kb on + strand, within IAI46_12100at 2561.038 kb on - strand, within IAI46_12100at 2561.051 kb on - strand, within IAI46_12100

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,557,992 - IAI46_12090 0.23 +0.7
2,558,023 + IAI46_12090 0.26 +0.8
2,558,218 + IAI46_12090 0.47 -0.3
2,558,342 - IAI46_12090 0.61 +0.5
2,558,480 - IAI46_12090 0.76 +0.2
2,558,499 - IAI46_12090 0.78 +0.6
2,558,499 - IAI46_12090 0.78 +0.5
2,558,525 - IAI46_12090 0.81 +0.7
2,558,525 - IAI46_12090 0.81 +0.9
2,558,538 + IAI46_12090 0.82 +0.5
2,558,539 - IAI46_12090 0.82 +0.4
2,558,624 - +0.8
2,558,648 + +1.2
2,558,648 + -0.8
2,558,649 - -0.2
2,558,674 - +0.4
2,558,786 + -0.1
2,558,787 - -0.1
2,558,793 - -0.1
2,558,822 - +0.6
2,558,880 + IAI46_12095 0.12 +1.8
2,558,886 + IAI46_12095 0.13 +0.8
2,558,886 + IAI46_12095 0.13 +0.2
2,559,526 + IAI46_12095 0.61 +0.8
2,559,526 + IAI46_12095 0.61 -0.6
2,559,526 + IAI46_12095 0.61 -0.5
2,559,563 + IAI46_12095 0.63 +0.6
2,559,563 + IAI46_12095 0.63 +0.9
2,560,019 - +0.2
2,560,047 + +1.2
2,560,058 - +0.8
2,560,069 + -0.6
2,560,436 - IAI46_12100 0.28 -0.4
2,560,481 + IAI46_12100 0.31 +0.7
2,560,482 - IAI46_12100 0.31 +0.7
2,560,545 - IAI46_12100 0.36 +0.4
2,560,665 - IAI46_12100 0.45 +0.4
2,560,927 + IAI46_12100 0.65 +0.8
2,560,991 + IAI46_12100 0.70 +0.9
2,561,038 - IAI46_12100 0.73 -0.1
2,561,051 - IAI46_12100 0.74 -1.6

Or see this region's nucleotide sequence