Strain Fitness in Serratia liquefaciens MT49 around IAI46_12035

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12030 and IAI46_12035 are separated by 5 nucleotidesIAI46_12035 and IAI46_12040 overlap by 1 nucleotides IAI46_12030: IAI46_12030 - ABC transporter permease, at 2,545,647 to 2,546,663 _12030 IAI46_12035: IAI46_12035 - D,D-dipeptide ABC transporter permease, at 2,546,669 to 2,547,556 _12035 IAI46_12040: IAI46_12040 - ABC transporter ATP-binding protein, at 2,547,556 to 2,548,560 _12040 IAI46_12045: IAI46_12045 - ABC transporter ATP-binding protein, at 2,548,550 to 2,549,497 _12045 Position (kb) 2546 2547 2548Strain fitness (log2 ratio) -2 -1 0 1at 2545.724 kb on + strandat 2545.837 kb on - strand, within IAI46_12030at 2546.020 kb on - strand, within IAI46_12030at 2546.027 kb on + strand, within IAI46_12030at 2546.108 kb on + strand, within IAI46_12030at 2546.349 kb on + strand, within IAI46_12030at 2546.350 kb on - strand, within IAI46_12030at 2546.464 kb on + strand, within IAI46_12030at 2546.464 kb on + strand, within IAI46_12030at 2546.464 kb on + strand, within IAI46_12030at 2546.465 kb on - strand, within IAI46_12030at 2546.470 kb on - strand, within IAI46_12030at 2546.521 kb on - strand, within IAI46_12030at 2546.706 kb on + strandat 2547.049 kb on - strand, within IAI46_12035at 2547.176 kb on + strand, within IAI46_12035at 2547.176 kb on + strand, within IAI46_12035at 2547.177 kb on - strand, within IAI46_12035at 2547.225 kb on - strand, within IAI46_12035at 2547.225 kb on - strand, within IAI46_12035at 2547.226 kb on + strand, within IAI46_12035at 2547.226 kb on + strand, within IAI46_12035at 2547.226 kb on + strand, within IAI46_12035at 2547.227 kb on - strand, within IAI46_12035at 2547.227 kb on - strand, within IAI46_12035at 2547.409 kb on + strand, within IAI46_12035at 2547.431 kb on + strand, within IAI46_12035at 2547.431 kb on + strand, within IAI46_12035at 2548.039 kb on - strand, within IAI46_12040at 2548.241 kb on - strand, within IAI46_12040at 2548.241 kb on - strand, within IAI46_12040at 2548.249 kb on + strand, within IAI46_12040at 2548.250 kb on - strand, within IAI46_12040at 2548.312 kb on + strand, within IAI46_12040at 2548.312 kb on + strand, within IAI46_12040at 2548.325 kb on + strand, within IAI46_12040at 2548.325 kb on + strand, within IAI46_12040at 2548.464 kb on + strandat 2548.477 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
2,545,724 + -0.0
2,545,837 - IAI46_12030 0.19 -0.7
2,546,020 - IAI46_12030 0.37 -0.4
2,546,027 + IAI46_12030 0.37 +1.4
2,546,108 + IAI46_12030 0.45 +0.0
2,546,349 + IAI46_12030 0.69 +0.9
2,546,350 - IAI46_12030 0.69 +0.9
2,546,464 + IAI46_12030 0.80 +0.4
2,546,464 + IAI46_12030 0.80 +0.2
2,546,464 + IAI46_12030 0.80 -0.0
2,546,465 - IAI46_12030 0.80 -0.1
2,546,470 - IAI46_12030 0.81 -0.9
2,546,521 - IAI46_12030 0.86 -0.5
2,546,706 + +0.2
2,547,049 - IAI46_12035 0.43 +0.3
2,547,176 + IAI46_12035 0.57 -0.1
2,547,176 + IAI46_12035 0.57 +0.2
2,547,177 - IAI46_12035 0.57 -0.0
2,547,225 - IAI46_12035 0.63 +0.9
2,547,225 - IAI46_12035 0.63 -2.0
2,547,226 + IAI46_12035 0.63 +0.8
2,547,226 + IAI46_12035 0.63 +0.9
2,547,226 + IAI46_12035 0.63 +0.7
2,547,227 - IAI46_12035 0.63 +0.3
2,547,227 - IAI46_12035 0.63 -0.0
2,547,409 + IAI46_12035 0.83 -0.4
2,547,431 + IAI46_12035 0.86 +0.6
2,547,431 + IAI46_12035 0.86 +0.3
2,548,039 - IAI46_12040 0.48 +0.5
2,548,241 - IAI46_12040 0.68 +0.4
2,548,241 - IAI46_12040 0.68 -0.1
2,548,249 + IAI46_12040 0.69 -0.0
2,548,250 - IAI46_12040 0.69 +0.4
2,548,312 + IAI46_12040 0.75 -0.2
2,548,312 + IAI46_12040 0.75 -0.3
2,548,325 + IAI46_12040 0.77 -0.1
2,548,325 + IAI46_12040 0.77 -0.5
2,548,464 + -0.4
2,548,477 - -0.1

Or see this region's nucleotide sequence