Strain Fitness in Serratia liquefaciens MT49 around IAI46_11780

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11775 and IAI46_11780 are separated by 310 nucleotidesIAI46_11780 and IAI46_11785 overlap by 4 nucleotides IAI46_11775: IAI46_11775 - ROK family transcriptional regulator, at 2,484,811 to 2,485,986 _11775 IAI46_11780: IAI46_11780 - guanine deaminase, at 2,486,297 to 2,487,628 _11780 IAI46_11785: IAI46_11785 - xanthine dehydrogenase small subunit, at 2,487,625 to 2,489,055 _11785 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -1 0 1 2at 2485.350 kb on + strand, within IAI46_11775at 2485.606 kb on + strand, within IAI46_11775at 2485.731 kb on - strand, within IAI46_11775at 2485.864 kb on + strand, within IAI46_11775at 2485.974 kb on - strandat 2486.003 kb on + strandat 2486.031 kb on + strandat 2486.064 kb on - strandat 2486.281 kb on - strandat 2486.373 kb on + strandat 2486.606 kb on - strand, within IAI46_11780at 2486.683 kb on - strand, within IAI46_11780at 2486.710 kb on - strand, within IAI46_11780at 2486.710 kb on - strand, within IAI46_11780at 2486.901 kb on - strand, within IAI46_11780at 2487.292 kb on + strand, within IAI46_11780at 2487.320 kb on + strand, within IAI46_11780at 2487.320 kb on + strand, within IAI46_11780at 2487.320 kb on + strand, within IAI46_11780at 2487.575 kb on + strandat 2487.575 kb on + strandat 2487.576 kb on - strandat 2488.003 kb on + strand, within IAI46_11785at 2488.332 kb on + strand, within IAI46_11785at 2488.435 kb on + strand, within IAI46_11785at 2488.436 kb on - strand, within IAI46_11785at 2488.550 kb on + strand, within IAI46_11785

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,485,350 + IAI46_11775 0.46 +0.3
2,485,606 + IAI46_11775 0.68 +0.8
2,485,731 - IAI46_11775 0.78 -0.2
2,485,864 + IAI46_11775 0.90 +0.5
2,485,974 - +0.2
2,486,003 + +1.9
2,486,031 + -0.6
2,486,064 - -1.4
2,486,281 - +1.4
2,486,373 + +0.9
2,486,606 - IAI46_11780 0.23 +0.1
2,486,683 - IAI46_11780 0.29 +0.2
2,486,710 - IAI46_11780 0.31 +0.5
2,486,710 - IAI46_11780 0.31 +0.8
2,486,901 - IAI46_11780 0.45 -0.1
2,487,292 + IAI46_11780 0.75 +0.0
2,487,320 + IAI46_11780 0.77 -0.4
2,487,320 + IAI46_11780 0.77 +0.3
2,487,320 + IAI46_11780 0.77 +0.5
2,487,575 + -0.7
2,487,575 + +0.5
2,487,576 - +0.8
2,488,003 + IAI46_11785 0.26 +0.3
2,488,332 + IAI46_11785 0.49 +0.4
2,488,435 + IAI46_11785 0.57 +0.5
2,488,436 - IAI46_11785 0.57 -0.4
2,488,550 + IAI46_11785 0.65 +0.1

Or see this region's nucleotide sequence