Strain Fitness in Serratia liquefaciens MT49 around IAI46_11745

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11740 and IAI46_11745 overlap by 1 nucleotidesIAI46_11745 and IAI46_11750 are separated by 93 nucleotides IAI46_11740: IAI46_11740 - fec operon regulator FecR, at 2,478,089 to 2,479,045 _11740 IAI46_11745: IAI46_11745 - sigma-70 family RNA polymerase sigma factor, at 2,479,045 to 2,479,566 _11745 IAI46_11750: IAI46_11750 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,479,660 to 2,480,739 _11750 Position (kb) 2479 2480Strain fitness (log2 ratio) -1 0 1at 2478.644 kb on + strand, within IAI46_11740at 2478.680 kb on - strand, within IAI46_11740at 2478.841 kb on - strand, within IAI46_11740at 2478.978 kb on - strandat 2479.111 kb on + strand, within IAI46_11745at 2479.521 kb on - strandat 2479.549 kb on - strandat 2479.774 kb on + strand, within IAI46_11750at 2480.174 kb on + strand, within IAI46_11750at 2480.175 kb on - strand, within IAI46_11750at 2480.175 kb on - strand, within IAI46_11750at 2480.278 kb on + strand, within IAI46_11750at 2480.290 kb on - strand, within IAI46_11750at 2480.351 kb on + strand, within IAI46_11750at 2480.480 kb on + strand, within IAI46_11750at 2480.481 kb on - strand, within IAI46_11750at 2480.481 kb on - strand, within IAI46_11750

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,478,644 + IAI46_11740 0.58 +0.8
2,478,680 - IAI46_11740 0.62 -0.8
2,478,841 - IAI46_11740 0.79 -0.1
2,478,978 - +0.6
2,479,111 + IAI46_11745 0.13 -0.2
2,479,521 - +0.8
2,479,549 - +0.1
2,479,774 + IAI46_11750 0.11 +0.4
2,480,174 + IAI46_11750 0.48 -0.1
2,480,175 - IAI46_11750 0.48 -0.5
2,480,175 - IAI46_11750 0.48 +0.2
2,480,278 + IAI46_11750 0.57 +0.2
2,480,290 - IAI46_11750 0.58 +0.1
2,480,351 + IAI46_11750 0.64 +0.9
2,480,480 + IAI46_11750 0.76 -0.2
2,480,481 - IAI46_11750 0.76 +0.8
2,480,481 - IAI46_11750 0.76 -0.8

Or see this region's nucleotide sequence