Strain Fitness in Serratia liquefaciens MT49 around IAI46_11300

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11290 and IAI46_11295 are separated by 150 nucleotidesIAI46_11295 and IAI46_11300 are separated by 141 nucleotidesIAI46_11300 and IAI46_11305 are separated by 21 nucleotidesIAI46_11305 and IAI46_11310 are separated by 99 nucleotides IAI46_11290: IAI46_11290 - phosphoethanolamine transferase EptA, at 2,381,804 to 2,383,441 _11290 IAI46_11295: IAI46_11295 - NAD(P)-dependent oxidoreductase, at 2,383,592 to 2,384,233 _11295 IAI46_11300: IAI46_11300 - LysR family transcriptional regulator, at 2,384,375 to 2,385,304 _11300 IAI46_11305: IAI46_11305 - DUF1289 domain-containing protein, at 2,385,326 to 2,385,565 _11305 IAI46_11310: IAI46_11310 - aldo/keto reductase family oxidoreductase, at 2,385,665 to 2,386,561 _11310 Position (kb) 2384 2385 2386Strain fitness (log2 ratio) -1 0 1 2at 2383.465 kb on - strandat 2383.465 kb on - strandat 2383.468 kb on + strandat 2383.591 kb on - strandat 2383.596 kb on + strandat 2383.597 kb on - strandat 2383.679 kb on - strand, within IAI46_11295at 2383.805 kb on + strand, within IAI46_11295at 2383.805 kb on + strand, within IAI46_11295at 2383.806 kb on - strand, within IAI46_11295at 2384.024 kb on - strand, within IAI46_11295at 2384.025 kb on + strand, within IAI46_11295at 2384.225 kb on + strandat 2384.251 kb on + strandat 2384.298 kb on + strandat 2384.298 kb on + strandat 2384.299 kb on - strandat 2384.302 kb on + strandat 2384.330 kb on + strandat 2384.330 kb on + strandat 2384.330 kb on + strandat 2384.331 kb on - strandat 2384.331 kb on - strandat 2384.331 kb on - strandat 2384.338 kb on + strandat 2384.774 kb on - strand, within IAI46_11300at 2385.005 kb on - strand, within IAI46_11300at 2385.234 kb on - strandat 2385.373 kb on + strand, within IAI46_11305at 2385.520 kb on + strand, within IAI46_11305at 2385.629 kb on + strandat 2385.630 kb on - strandat 2385.823 kb on + strand, within IAI46_11310at 2385.823 kb on + strand, within IAI46_11310at 2385.827 kb on + strand, within IAI46_11310at 2385.928 kb on + strand, within IAI46_11310at 2385.959 kb on + strand, within IAI46_11310at 2385.960 kb on - strand, within IAI46_11310at 2385.979 kb on + strand, within IAI46_11310at 2385.979 kb on + strand, within IAI46_11310at 2386.235 kb on - strand, within IAI46_11310

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,383,465 - +0.2
2,383,465 - +1.0
2,383,468 + +0.0
2,383,591 - +0.3
2,383,596 + +0.4
2,383,597 - -0.2
2,383,679 - IAI46_11295 0.14 +1.0
2,383,805 + IAI46_11295 0.33 +2.1
2,383,805 + IAI46_11295 0.33 +0.7
2,383,806 - IAI46_11295 0.33 -0.3
2,384,024 - IAI46_11295 0.67 +0.3
2,384,025 + IAI46_11295 0.67 +0.7
2,384,225 + -0.6
2,384,251 + +0.8
2,384,298 + +1.3
2,384,298 + -0.5
2,384,299 - -0.2
2,384,302 + +0.2
2,384,330 + -1.1
2,384,330 + +0.3
2,384,330 + -0.5
2,384,331 - +0.3
2,384,331 - -0.8
2,384,331 - +0.1
2,384,338 + -0.1
2,384,774 - IAI46_11300 0.43 -0.7
2,385,005 - IAI46_11300 0.68 +0.3
2,385,234 - +0.3
2,385,373 + IAI46_11305 0.20 -0.7
2,385,520 + IAI46_11305 0.81 +0.3
2,385,629 + +0.8
2,385,630 - -1.1
2,385,823 + IAI46_11310 0.18 +0.2
2,385,823 + IAI46_11310 0.18 +0.1
2,385,827 + IAI46_11310 0.18 +0.6
2,385,928 + IAI46_11310 0.29 +0.3
2,385,959 + IAI46_11310 0.33 +0.2
2,385,960 - IAI46_11310 0.33 +0.4
2,385,979 + IAI46_11310 0.35 +0.4
2,385,979 + IAI46_11310 0.35 -0.5
2,386,235 - IAI46_11310 0.64 +0.3

Or see this region's nucleotide sequence