Strain Fitness in Serratia liquefaciens MT49 around IAI46_11145

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11140 and IAI46_11145 are separated by 555 nucleotidesIAI46_11145 and IAI46_11150 are separated by 14 nucleotides IAI46_11140: IAI46_11140 - hypothetical protein, at 2,356,104 to 2,356,508 _11140 IAI46_11145: IAI46_11145 - Fe-S cluster assembly scaffold SufA, at 2,357,064 to 2,357,435 _11145 IAI46_11150: IAI46_11150 - Fe-S cluster assembly protein SufB, at 2,357,450 to 2,358,946 _11150 Position (kb) 2357 2358Strain fitness (log2 ratio) -1 0 1at 2356.105 kb on + strandat 2356.283 kb on + strand, within IAI46_11140at 2356.309 kb on + strand, within IAI46_11140at 2356.310 kb on - strand, within IAI46_11140at 2356.310 kb on - strand, within IAI46_11140at 2356.310 kb on - strand, within IAI46_11140at 2356.460 kb on + strand, within IAI46_11140at 2356.460 kb on + strand, within IAI46_11140at 2356.634 kb on - strandat 2356.662 kb on + strandat 2356.841 kb on + strandat 2357.016 kb on + strandat 2357.016 kb on + strandat 2357.056 kb on + strandat 2357.063 kb on + strandat 2357.132 kb on + strand, within IAI46_11145at 2357.154 kb on - strand, within IAI46_11145at 2357.158 kb on + strand, within IAI46_11145at 2357.229 kb on + strand, within IAI46_11145at 2357.230 kb on - strand, within IAI46_11145at 2357.298 kb on + strand, within IAI46_11145at 2357.299 kb on - strand, within IAI46_11145at 2357.372 kb on - strand, within IAI46_11145at 2357.372 kb on - strand, within IAI46_11145at 2357.390 kb on + strand, within IAI46_11145at 2357.466 kb on + strandat 2357.512 kb on + strandat 2357.711 kb on + strand, within IAI46_11150at 2357.711 kb on + strand, within IAI46_11150at 2357.810 kb on + strand, within IAI46_11150at 2357.922 kb on - strand, within IAI46_11150at 2358.005 kb on + strand, within IAI46_11150at 2358.087 kb on - strand, within IAI46_11150at 2358.198 kb on - strand, within IAI46_11150

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,356,105 + +0.4
2,356,283 + IAI46_11140 0.44 -1.1
2,356,309 + IAI46_11140 0.51 +0.7
2,356,310 - IAI46_11140 0.51 +0.1
2,356,310 - IAI46_11140 0.51 -0.1
2,356,310 - IAI46_11140 0.51 -0.1
2,356,460 + IAI46_11140 0.88 -0.1
2,356,460 + IAI46_11140 0.88 -0.2
2,356,634 - +1.0
2,356,662 + +0.7
2,356,841 + -1.1
2,357,016 + -0.4
2,357,016 + +0.6
2,357,056 + -0.1
2,357,063 + -1.2
2,357,132 + IAI46_11145 0.18 -0.2
2,357,154 - IAI46_11145 0.24 -0.2
2,357,158 + IAI46_11145 0.25 -0.2
2,357,229 + IAI46_11145 0.44 +0.3
2,357,230 - IAI46_11145 0.45 +0.5
2,357,298 + IAI46_11145 0.63 -0.0
2,357,299 - IAI46_11145 0.63 +0.0
2,357,372 - IAI46_11145 0.83 +0.5
2,357,372 - IAI46_11145 0.83 -0.7
2,357,390 + IAI46_11145 0.88 +0.2
2,357,466 + +0.7
2,357,512 + +0.4
2,357,711 + IAI46_11150 0.17 +0.4
2,357,711 + IAI46_11150 0.17 +1.0
2,357,810 + IAI46_11150 0.24 +0.3
2,357,922 - IAI46_11150 0.32 -0.5
2,358,005 + IAI46_11150 0.37 +0.4
2,358,087 - IAI46_11150 0.43 -1.6
2,358,198 - IAI46_11150 0.50 -0.2

Or see this region's nucleotide sequence