Strain Fitness in Serratia liquefaciens MT49 around IAI46_10060

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10045 and IAI46_10050 are separated by 219 nucleotidesIAI46_10050 and IAI46_10055 are separated by 177 nucleotidesIAI46_10055 and IAI46_10060 are separated by 12 nucleotidesIAI46_10060 and IAI46_10065 are separated by 42 nucleotidesIAI46_10065 and IAI46_10070 overlap by 4 nucleotidesIAI46_10070 and IAI46_10075 are separated by 160 nucleotides IAI46_10045: IAI46_10045 - helix-turn-helix transcriptional regulator, at 2,121,131 to 2,121,346 _10045 IAI46_10050: IAI46_10050 - hypothetical protein, at 2,121,566 to 2,121,790 _10050 IAI46_10055: IAI46_10055 - hypothetical protein, at 2,121,968 to 2,122,288 _10055 IAI46_10060: IAI46_10060 - hypothetical protein, at 2,122,301 to 2,122,624 _10060 IAI46_10065: IAI46_10065 - hypothetical protein, at 2,122,667 to 2,123,026 _10065 IAI46_10070: IAI46_10070 - LysR family transcriptional regulator, at 2,123,023 to 2,123,130 _10070 IAI46_10075: IAI46_10075 - two-component system response regulator DcuR, at 2,123,291 to 2,124,004 _10075 Position (kb) 2122 2123Strain fitness (log2 ratio) -2 -1 0 1 2at 2121.382 kb on + strandat 2121.382 kb on + strandat 2121.394 kb on - strandat 2121.420 kb on + strandat 2121.460 kb on + strandat 2121.526 kb on + strandat 2121.800 kb on + strandat 2121.897 kb on - strandat 2122.041 kb on - strand, within IAI46_10055at 2122.171 kb on + strand, within IAI46_10055at 2122.186 kb on + strand, within IAI46_10055at 2122.274 kb on - strandat 2122.475 kb on + strand, within IAI46_10060at 2122.479 kb on + strand, within IAI46_10060at 2122.480 kb on - strand, within IAI46_10060at 2122.563 kb on + strand, within IAI46_10060at 2122.622 kb on + strandat 2122.648 kb on + strandat 2122.649 kb on - strandat 2122.739 kb on + strand, within IAI46_10065at 2122.739 kb on + strand, within IAI46_10065at 2122.739 kb on + strand, within IAI46_10065at 2122.739 kb on + strand, within IAI46_10065at 2122.803 kb on + strand, within IAI46_10065at 2122.810 kb on + strand, within IAI46_10065at 2122.810 kb on + strand, within IAI46_10065at 2122.811 kb on - strand, within IAI46_10065at 2122.815 kb on + strand, within IAI46_10065at 2122.919 kb on + strand, within IAI46_10065at 2123.025 kb on - strandat 2123.092 kb on + strand, within IAI46_10070at 2123.093 kb on - strand, within IAI46_10070at 2123.222 kb on + strandat 2123.223 kb on - strandat 2123.228 kb on + strandat 2123.236 kb on + strandat 2123.237 kb on - strandat 2123.239 kb on + strandat 2123.240 kb on - strandat 2123.347 kb on - strandat 2123.409 kb on + strand, within IAI46_10075at 2123.410 kb on - strand, within IAI46_10075at 2123.410 kb on - strand, within IAI46_10075at 2123.413 kb on + strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.418 kb on + strand, within IAI46_10075at 2123.419 kb on - strand, within IAI46_10075at 2123.524 kb on + strand, within IAI46_10075

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,121,382 + +1.5
2,121,382 + -0.5
2,121,394 - +0.0
2,121,420 + +0.3
2,121,460 + +0.3
2,121,526 + -0.0
2,121,800 + +1.8
2,121,897 - -0.1
2,122,041 - IAI46_10055 0.23 -0.8
2,122,171 + IAI46_10055 0.63 -0.3
2,122,186 + IAI46_10055 0.68 +0.3
2,122,274 - -0.7
2,122,475 + IAI46_10060 0.54 +0.3
2,122,479 + IAI46_10060 0.55 +0.3
2,122,480 - IAI46_10060 0.55 -0.1
2,122,563 + IAI46_10060 0.81 +0.3
2,122,622 + +0.3
2,122,648 + +0.2
2,122,649 - -0.0
2,122,739 + IAI46_10065 0.20 +0.3
2,122,739 + IAI46_10065 0.20 -0.7
2,122,739 + IAI46_10065 0.20 +1.1
2,122,739 + IAI46_10065 0.20 -0.3
2,122,803 + IAI46_10065 0.38 +0.3
2,122,810 + IAI46_10065 0.40 -0.6
2,122,810 + IAI46_10065 0.40 +1.0
2,122,811 - IAI46_10065 0.40 +0.0
2,122,815 + IAI46_10065 0.41 -0.2
2,122,919 + IAI46_10065 0.70 +0.1
2,123,025 - -0.3
2,123,092 + IAI46_10070 0.64 -0.2
2,123,093 - IAI46_10070 0.65 +1.0
2,123,222 + -0.6
2,123,223 - +0.2
2,123,228 + -0.1
2,123,236 + -0.5
2,123,237 - -0.2
2,123,239 + -1.2
2,123,240 - -2.2
2,123,347 - +1.2
2,123,409 + IAI46_10075 0.17 +2.0
2,123,410 - IAI46_10075 0.17 +0.0
2,123,410 - IAI46_10075 0.17 -0.4
2,123,413 + IAI46_10075 0.17 -0.2
2,123,414 - IAI46_10075 0.17 +0.3
2,123,414 - IAI46_10075 0.17 +0.2
2,123,414 - IAI46_10075 0.17 -0.5
2,123,418 + IAI46_10075 0.18 -1.0
2,123,419 - IAI46_10075 0.18 +0.3
2,123,524 + IAI46_10075 0.33 +0.1

Or see this region's nucleotide sequence