Strain Fitness in Serratia liquefaciens MT49 around IAI46_09680

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09675 and IAI46_09680 are separated by 454 nucleotidesIAI46_09680 and IAI46_09685 are separated by 207 nucleotides IAI46_09675: IAI46_09675 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee, at 2,051,813 to 2,052,733 _09675 IAI46_09680: IAI46_09680 - NADH:flavin oxidoreductase/NADH oxidase, at 2,053,188 to 2,054,285 _09680 IAI46_09685: IAI46_09685 - rhodanese-related sulfurtransferase, at 2,054,493 to 2,055,563 _09685 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2052.784 kb on - strandat 2052.833 kb on + strandat 2052.843 kb on + strandat 2052.886 kb on - strandat 2052.979 kb on + strandat 2053.007 kb on + strandat 2053.007 kb on + strandat 2053.008 kb on - strandat 2053.008 kb on - strandat 2053.008 kb on - strandat 2053.024 kb on + strandat 2053.127 kb on + strandat 2053.128 kb on - strandat 2053.128 kb on - strandat 2053.215 kb on + strandat 2053.303 kb on + strand, within IAI46_09680at 2053.303 kb on + strand, within IAI46_09680at 2053.304 kb on - strand, within IAI46_09680at 2053.304 kb on - strand, within IAI46_09680at 2053.441 kb on - strand, within IAI46_09680at 2053.595 kb on + strand, within IAI46_09680at 2053.645 kb on + strand, within IAI46_09680at 2053.700 kb on + strand, within IAI46_09680at 2053.741 kb on + strand, within IAI46_09680at 2054.226 kb on - strandat 2054.226 kb on - strandat 2054.229 kb on + strandat 2054.230 kb on - strandat 2054.231 kb on + strandat 2054.231 kb on + strandat 2054.231 kb on + strandat 2054.231 kb on + strandat 2054.232 kb on - strandat 2054.232 kb on - strandat 2054.232 kb on - strandat 2054.262 kb on - strandat 2054.270 kb on + strandat 2054.270 kb on + strandat 2054.275 kb on - strandat 2054.275 kb on - strandat 2054.375 kb on - strandat 2054.416 kb on + strandat 2054.419 kb on + strandat 2054.419 kb on + strandat 2054.420 kb on - strandat 2054.420 kb on - strandat 2054.488 kb on - strandat 2054.488 kb on - strandat 2054.488 kb on - strandat 2054.503 kb on + strandat 2054.504 kb on - strandat 2054.504 kb on - strandat 2054.504 kb on - strandat 2054.507 kb on + strandat 2054.507 kb on + strandat 2054.508 kb on - strandat 2054.628 kb on + strand, within IAI46_09685at 2054.628 kb on + strand, within IAI46_09685at 2054.629 kb on - strand, within IAI46_09685at 2054.668 kb on - strand, within IAI46_09685at 2054.668 kb on - strand, within IAI46_09685at 2054.668 kb on - strand, within IAI46_09685at 2054.780 kb on + strand, within IAI46_09685at 2054.815 kb on + strand, within IAI46_09685at 2054.895 kb on + strand, within IAI46_09685at 2054.895 kb on + strand, within IAI46_09685at 2055.017 kb on + strand, within IAI46_09685at 2055.065 kb on + strand, within IAI46_09685at 2055.087 kb on + strand, within IAI46_09685at 2055.087 kb on + strand, within IAI46_09685at 2055.088 kb on - strand, within IAI46_09685at 2055.101 kb on + strand, within IAI46_09685at 2055.126 kb on + strand, within IAI46_09685at 2055.128 kb on + strand, within IAI46_09685at 2055.128 kb on + strand, within IAI46_09685at 2055.129 kb on - strand, within IAI46_09685at 2055.156 kb on + strand, within IAI46_09685

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,052,784 - -1.4
2,052,833 + +0.2
2,052,843 + +0.9
2,052,886 - +0.4
2,052,979 + -0.0
2,053,007 + -0.6
2,053,007 + +0.1
2,053,008 - +1.4
2,053,008 - +0.4
2,053,008 - +0.1
2,053,024 + -0.6
2,053,127 + +0.5
2,053,128 - -1.4
2,053,128 - -1.2
2,053,215 + -0.0
2,053,303 + IAI46_09680 0.10 -0.0
2,053,303 + IAI46_09680 0.10 -0.2
2,053,304 - IAI46_09680 0.11 -0.1
2,053,304 - IAI46_09680 0.11 +1.1
2,053,441 - IAI46_09680 0.23 -0.3
2,053,595 + IAI46_09680 0.37 +1.1
2,053,645 + IAI46_09680 0.42 +0.1
2,053,700 + IAI46_09680 0.47 -0.2
2,053,741 + IAI46_09680 0.50 -0.7
2,054,226 - +0.8
2,054,226 - -0.8
2,054,229 + +1.1
2,054,230 - +0.6
2,054,231 + +0.5
2,054,231 + +0.5
2,054,231 + -0.9
2,054,231 + -0.4
2,054,232 - -0.2
2,054,232 - -0.5
2,054,232 - +1.2
2,054,262 - -0.0
2,054,270 + +0.5
2,054,270 + +0.1
2,054,275 - -0.8
2,054,275 - +0.5
2,054,375 - +0.8
2,054,416 + -0.5
2,054,419 + +0.2
2,054,419 + -0.1
2,054,420 - +0.2
2,054,420 - -0.2
2,054,488 - -1.0
2,054,488 - -0.6
2,054,488 - -0.9
2,054,503 + +1.0
2,054,504 - +0.3
2,054,504 - -0.1
2,054,504 - +1.1
2,054,507 + +1.9
2,054,507 + -0.3
2,054,508 - +0.8
2,054,628 + IAI46_09685 0.13 +0.8
2,054,628 + IAI46_09685 0.13 +0.2
2,054,629 - IAI46_09685 0.13 -0.4
2,054,668 - IAI46_09685 0.16 -1.2
2,054,668 - IAI46_09685 0.16 +0.4
2,054,668 - IAI46_09685 0.16 +0.4
2,054,780 + IAI46_09685 0.27 +0.0
2,054,815 + IAI46_09685 0.30 +1.4
2,054,895 + IAI46_09685 0.38 -0.1
2,054,895 + IAI46_09685 0.38 +0.1
2,055,017 + IAI46_09685 0.49 -0.5
2,055,065 + IAI46_09685 0.53 -0.1
2,055,087 + IAI46_09685 0.55 -0.4
2,055,087 + IAI46_09685 0.55 +0.4
2,055,088 - IAI46_09685 0.56 -0.5
2,055,101 + IAI46_09685 0.57 +0.9
2,055,126 + IAI46_09685 0.59 -3.6
2,055,128 + IAI46_09685 0.59 -0.8
2,055,128 + IAI46_09685 0.59 -0.8
2,055,129 - IAI46_09685 0.59 +1.2
2,055,156 + IAI46_09685 0.62 +0.2

Or see this region's nucleotide sequence