Strain Fitness in Serratia liquefaciens MT49 around IAI46_09605

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09600 and IAI46_09605 are separated by 258 nucleotidesIAI46_09605 and IAI46_09610 overlap by 8 nucleotides IAI46_09600: IAI46_09600 - glucans biosynthesis protein MdoC, at 2,036,525 to 2,037,655 _09600 IAI46_09605: IAI46_09605 - glucan biosynthesis protein G, at 2,037,914 to 2,039,482 _09605 IAI46_09610: IAI46_09610 - glucans biosynthesis glucosyltransferase MdoH, at 2,039,475 to 2,042,036 _09610 Position (kb) 2037 2038 2039 2040Strain fitness (log2 ratio) -2 -1 0 1at 2036.991 kb on + strand, within IAI46_09600at 2037.093 kb on + strand, within IAI46_09600at 2037.263 kb on + strand, within IAI46_09600at 2037.279 kb on + strand, within IAI46_09600at 2037.306 kb on - strand, within IAI46_09600at 2037.433 kb on - strand, within IAI46_09600at 2037.551 kb on - strandat 2037.551 kb on - strandat 2037.551 kb on - strandat 2037.551 kb on - strandat 2037.603 kb on + strandat 2037.655 kb on + strandat 2037.655 kb on + strandat 2037.655 kb on + strandat 2037.655 kb on + strandat 2037.701 kb on + strandat 2037.701 kb on + strandat 2037.701 kb on + strandat 2037.702 kb on - strandat 2037.716 kb on + strandat 2037.735 kb on + strandat 2037.736 kb on - strandat 2037.736 kb on - strandat 2037.736 kb on - strandat 2037.738 kb on + strandat 2037.738 kb on + strandat 2037.738 kb on + strandat 2037.739 kb on - strandat 2037.807 kb on + strandat 2037.813 kb on - strandat 2037.841 kb on - strandat 2037.871 kb on + strandat 2037.875 kb on - strandat 2037.918 kb on + strandat 2037.919 kb on - strandat 2037.919 kb on - strandat 2037.923 kb on - strandat 2037.925 kb on + strandat 2037.927 kb on + strandat 2037.928 kb on - strandat 2037.957 kb on + strandat 2037.957 kb on + strandat 2037.966 kb on + strandat 2037.966 kb on + strandat 2038.020 kb on + strandat 2038.154 kb on + strand, within IAI46_09605at 2038.155 kb on - strand, within IAI46_09605at 2038.208 kb on + strand, within IAI46_09605at 2038.208 kb on + strand, within IAI46_09605at 2038.254 kb on + strand, within IAI46_09605at 2038.391 kb on - strand, within IAI46_09605at 2038.706 kb on + strand, within IAI46_09605at 2038.780 kb on + strand, within IAI46_09605at 2038.780 kb on + strand, within IAI46_09605at 2038.822 kb on + strand, within IAI46_09605at 2038.850 kb on + strand, within IAI46_09605at 2038.898 kb on - strand, within IAI46_09605at 2038.911 kb on - strand, within IAI46_09605at 2039.094 kb on - strand, within IAI46_09605at 2039.147 kb on + strand, within IAI46_09605at 2039.466 kb on + strandat 2039.481 kb on - strandat 2039.481 kb on - strandat 2039.506 kb on - strandat 2039.630 kb on + strandat 2039.630 kb on + strandat 2039.631 kb on - strandat 2039.920 kb on - strand, within IAI46_09610at 2039.967 kb on + strand, within IAI46_09610at 2040.066 kb on + strand, within IAI46_09610at 2040.066 kb on + strand, within IAI46_09610at 2040.066 kb on + strand, within IAI46_09610at 2040.066 kb on + strand, within IAI46_09610at 2040.066 kb on + strand, within IAI46_09610at 2040.067 kb on - strand, within IAI46_09610at 2040.067 kb on - strand, within IAI46_09610at 2040.067 kb on - strand, within IAI46_09610at 2040.186 kb on - strand, within IAI46_09610at 2040.186 kb on - strand, within IAI46_09610at 2040.301 kb on - strand, within IAI46_09610at 2040.338 kb on - strand, within IAI46_09610at 2040.345 kb on + strand, within IAI46_09610at 2040.346 kb on - strand, within IAI46_09610at 2040.363 kb on + strand, within IAI46_09610at 2040.363 kb on + strand, within IAI46_09610at 2040.364 kb on - strand, within IAI46_09610at 2040.364 kb on - strand, within IAI46_09610at 2040.422 kb on - strand, within IAI46_09610

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,036,991 + IAI46_09600 0.41 +0.6
2,037,093 + IAI46_09600 0.50 +0.6
2,037,263 + IAI46_09600 0.65 +0.6
2,037,279 + IAI46_09600 0.67 -0.2
2,037,306 - IAI46_09600 0.69 +0.1
2,037,433 - IAI46_09600 0.80 -0.3
2,037,551 - -1.1
2,037,551 - +0.5
2,037,551 - -0.4
2,037,551 - +0.8
2,037,603 + +1.1
2,037,655 + +0.7
2,037,655 + +0.1
2,037,655 + -0.6
2,037,655 + -0.0
2,037,701 + -1.1
2,037,701 + +0.1
2,037,701 + -0.4
2,037,702 - -0.9
2,037,716 + -1.8
2,037,735 + +0.1
2,037,736 - +0.2
2,037,736 - +0.5
2,037,736 - -0.2
2,037,738 + -1.7
2,037,738 + +0.6
2,037,738 + -0.3
2,037,739 - +1.0
2,037,807 + +0.1
2,037,813 - +0.5
2,037,841 - +0.0
2,037,871 + +1.4
2,037,875 - -0.9
2,037,918 + +0.1
2,037,919 - -0.2
2,037,919 - -0.0
2,037,923 - -0.2
2,037,925 + -2.5
2,037,927 + -0.9
2,037,928 - +1.1
2,037,957 + +0.3
2,037,957 + +0.4
2,037,966 + -2.4
2,037,966 + -0.0
2,038,020 + +0.4
2,038,154 + IAI46_09605 0.15 +0.6
2,038,155 - IAI46_09605 0.15 +0.4
2,038,208 + IAI46_09605 0.19 +0.8
2,038,208 + IAI46_09605 0.19 +0.3
2,038,254 + IAI46_09605 0.22 -0.6
2,038,391 - IAI46_09605 0.30 +0.1
2,038,706 + IAI46_09605 0.50 -0.1
2,038,780 + IAI46_09605 0.55 -0.1
2,038,780 + IAI46_09605 0.55 +0.4
2,038,822 + IAI46_09605 0.58 -0.2
2,038,850 + IAI46_09605 0.60 -0.2
2,038,898 - IAI46_09605 0.63 -0.3
2,038,911 - IAI46_09605 0.64 +0.1
2,039,094 - IAI46_09605 0.75 +0.7
2,039,147 + IAI46_09605 0.79 +0.3
2,039,466 + -0.1
2,039,481 - +0.1
2,039,481 - +0.4
2,039,506 - -0.2
2,039,630 + -0.2
2,039,630 + +0.9
2,039,631 - +0.4
2,039,920 - IAI46_09610 0.17 -0.9
2,039,967 + IAI46_09610 0.19 +0.7
2,040,066 + IAI46_09610 0.23 +1.0
2,040,066 + IAI46_09610 0.23 -1.5
2,040,066 + IAI46_09610 0.23 -0.8
2,040,066 + IAI46_09610 0.23 -0.3
2,040,066 + IAI46_09610 0.23 +0.1
2,040,067 - IAI46_09610 0.23 +0.5
2,040,067 - IAI46_09610 0.23 +0.6
2,040,067 - IAI46_09610 0.23 -1.0
2,040,186 - IAI46_09610 0.28 -0.2
2,040,186 - IAI46_09610 0.28 -0.4
2,040,301 - IAI46_09610 0.32 -0.5
2,040,338 - IAI46_09610 0.34 -0.1
2,040,345 + IAI46_09610 0.34 -1.2
2,040,346 - IAI46_09610 0.34 -1.3
2,040,363 + IAI46_09610 0.35 -0.2
2,040,363 + IAI46_09610 0.35 +0.2
2,040,364 - IAI46_09610 0.35 -0.1
2,040,364 - IAI46_09610 0.35 -0.6
2,040,422 - IAI46_09610 0.37 -0.0

Or see this region's nucleotide sequence