Strain Fitness in Serratia liquefaciens MT49 around IAI46_08860

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08850 and IAI46_08855 overlap by 4 nucleotidesIAI46_08855 and IAI46_08860 are separated by 129 nucleotidesIAI46_08860 and IAI46_08865 are separated by 68 nucleotides IAI46_08850: IAI46_08850 - beta-ketoacyl-ACP synthase II, at 1,900,104 to 1,901,378 _08850 IAI46_08855: IAI46_08855 - helix-turn-helix transcriptional regulator, at 1,901,375 to 1,901,902 _08855 IAI46_08860: IAI46_08860 - bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase, at 1,902,032 to 1,902,550 _08860 IAI46_08865: IAI46_08865 - Lon protease family protein, at 1,902,619 to 1,904,370 _08865 Position (kb) 1902 1903Strain fitness (log2 ratio) -3 -2 -1 0 1at 1901.064 kb on - strand, within IAI46_08850at 1901.309 kb on + strandat 1901.317 kb on - strandat 1901.379 kb on - strandat 1901.379 kb on - strandat 1901.482 kb on + strand, within IAI46_08855at 1901.483 kb on - strand, within IAI46_08855at 1901.483 kb on - strand, within IAI46_08855at 1901.488 kb on + strand, within IAI46_08855at 1901.531 kb on + strand, within IAI46_08855at 1901.599 kb on + strand, within IAI46_08855at 1901.671 kb on - strand, within IAI46_08855at 1901.676 kb on - strand, within IAI46_08855at 1901.701 kb on + strand, within IAI46_08855at 1901.702 kb on - strand, within IAI46_08855at 1901.765 kb on + strand, within IAI46_08855at 1901.907 kb on + strandat 1901.907 kb on + strandat 1901.907 kb on + strandat 1901.907 kb on + strandat 1901.908 kb on - strandat 1901.922 kb on - strandat 1901.927 kb on - strandat 1901.943 kb on + strandat 1901.965 kb on + strandat 1901.979 kb on + strandat 1901.980 kb on - strandat 1901.982 kb on + strandat 1901.983 kb on - strandat 1902.594 kb on - strandat 1902.723 kb on + strandat 1902.724 kb on - strandat 1902.744 kb on - strandat 1902.760 kb on + strandat 1902.761 kb on - strandat 1902.830 kb on - strand, within IAI46_08865at 1902.842 kb on - strand, within IAI46_08865at 1902.864 kb on + strand, within IAI46_08865at 1902.955 kb on - strand, within IAI46_08865at 1903.009 kb on - strand, within IAI46_08865at 1903.036 kb on - strand, within IAI46_08865at 1903.046 kb on - strand, within IAI46_08865at 1903.164 kb on + strand, within IAI46_08865at 1903.180 kb on - strand, within IAI46_08865at 1903.473 kb on - strand, within IAI46_08865at 1903.473 kb on - strand, within IAI46_08865

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,901,064 - IAI46_08850 0.75 +0.4
1,901,309 + -0.1
1,901,317 - -0.2
1,901,379 - +0.7
1,901,379 - +1.5
1,901,482 + IAI46_08855 0.20 -0.3
1,901,483 - IAI46_08855 0.20 -0.1
1,901,483 - IAI46_08855 0.20 +0.3
1,901,488 + IAI46_08855 0.21 -0.5
1,901,531 + IAI46_08855 0.30 -0.5
1,901,599 + IAI46_08855 0.42 +0.4
1,901,671 - IAI46_08855 0.56 -0.0
1,901,676 - IAI46_08855 0.57 +0.5
1,901,701 + IAI46_08855 0.62 +1.4
1,901,702 - IAI46_08855 0.62 -0.0
1,901,765 + IAI46_08855 0.74 +0.7
1,901,907 + -3.0
1,901,907 + -0.2
1,901,907 + +0.3
1,901,907 + +1.1
1,901,908 - -1.1
1,901,922 - -0.9
1,901,927 - +0.6
1,901,943 + -0.2
1,901,965 + -1.1
1,901,979 + -0.6
1,901,980 - +0.7
1,901,982 + +0.5
1,901,983 - +0.2
1,902,594 - -0.5
1,902,723 + +0.3
1,902,724 - -1.1
1,902,744 - +0.0
1,902,760 + +0.8
1,902,761 - +0.0
1,902,830 - IAI46_08865 0.12 +0.3
1,902,842 - IAI46_08865 0.13 -0.7
1,902,864 + IAI46_08865 0.14 -0.2
1,902,955 - IAI46_08865 0.19 +0.2
1,903,009 - IAI46_08865 0.22 -1.2
1,903,036 - IAI46_08865 0.24 -0.4
1,903,046 - IAI46_08865 0.24 +0.1
1,903,164 + IAI46_08865 0.31 -0.7
1,903,180 - IAI46_08865 0.32 -0.6
1,903,473 - IAI46_08865 0.49 +0.0
1,903,473 - IAI46_08865 0.49 -0.1

Or see this region's nucleotide sequence