Strain Fitness in Serratia liquefaciens MT49 around IAI46_08665

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08660 and IAI46_08665 are separated by 35 nucleotidesIAI46_08665 and IAI46_08670 overlap by 1 nucleotidesIAI46_08670 and IAI46_08675 are separated by 1 nucleotides IAI46_08660: IAI46_08660 - ComEC family protein, at 1,850,758 to 1,853,022 _08660 IAI46_08665: IAI46_08665 - lipid A ABC transporter ATP-binding protein/permease MsbA, at 1,853,058 to 1,854,806 _08665 IAI46_08670: IAI46_08670 - tetraacyldisaccharide 4'-kinase, at 1,854,806 to 1,855,786 _08670 IAI46_08675: IAI46_08675 - VOC family protein, at 1,855,788 to 1,857,194 _08675 Position (kb) 1853 1854 1855Strain fitness (log2 ratio) -1 0 1 2at 1852.076 kb on + strand, within IAI46_08660at 1852.077 kb on - strand, within IAI46_08660at 1852.082 kb on - strand, within IAI46_08660at 1852.082 kb on - strand, within IAI46_08660at 1852.135 kb on - strand, within IAI46_08660at 1852.135 kb on - strand, within IAI46_08660at 1852.259 kb on + strand, within IAI46_08660at 1852.260 kb on - strand, within IAI46_08660at 1852.263 kb on + strand, within IAI46_08660at 1852.263 kb on + strand, within IAI46_08660at 1852.263 kb on + strand, within IAI46_08660at 1852.263 kb on + strand, within IAI46_08660at 1852.264 kb on - strand, within IAI46_08660at 1852.324 kb on + strand, within IAI46_08660at 1852.325 kb on - strand, within IAI46_08660at 1852.387 kb on - strand, within IAI46_08660at 1852.520 kb on + strand, within IAI46_08660at 1852.521 kb on - strand, within IAI46_08660at 1852.521 kb on - strand, within IAI46_08660at 1852.629 kb on + strand, within IAI46_08660at 1852.733 kb on + strand, within IAI46_08660at 1852.734 kb on - strand, within IAI46_08660at 1852.808 kb on + strandat 1852.830 kb on + strandat 1852.887 kb on - strandat 1852.887 kb on - strandat 1852.950 kb on + strandat 1852.971 kb on - strandat 1853.003 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,852,076 + IAI46_08660 0.58 +0.6
1,852,077 - IAI46_08660 0.58 -1.2
1,852,082 - IAI46_08660 0.58 -0.4
1,852,082 - IAI46_08660 0.58 +1.2
1,852,135 - IAI46_08660 0.61 -1.4
1,852,135 - IAI46_08660 0.61 +1.8
1,852,259 + IAI46_08660 0.66 -0.6
1,852,260 - IAI46_08660 0.66 +1.1
1,852,263 + IAI46_08660 0.66 +0.4
1,852,263 + IAI46_08660 0.66 -0.8
1,852,263 + IAI46_08660 0.66 -0.0
1,852,263 + IAI46_08660 0.66 +0.4
1,852,264 - IAI46_08660 0.66 +0.6
1,852,324 + IAI46_08660 0.69 -1.2
1,852,325 - IAI46_08660 0.69 +1.0
1,852,387 - IAI46_08660 0.72 +0.6
1,852,520 + IAI46_08660 0.78 +0.4
1,852,521 - IAI46_08660 0.78 +0.4
1,852,521 - IAI46_08660 0.78 +0.9
1,852,629 + IAI46_08660 0.83 -0.2
1,852,733 + IAI46_08660 0.87 +0.5
1,852,734 - IAI46_08660 0.87 +0.4
1,852,808 + -0.2
1,852,830 + -0.3
1,852,887 - +0.6
1,852,887 - -0.0
1,852,950 + +0.6
1,852,971 - -1.4
1,853,003 + -0.2

Or see this region's nucleotide sequence