Strain Fitness in Serratia liquefaciens MT49 around IAI46_06335

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06330 and IAI46_06335 are separated by 132 nucleotidesIAI46_06335 and IAI46_06340 are separated by 44 nucleotidesIAI46_06340 and IAI46_06345 are separated by 9 nucleotides IAI46_06330: IAI46_06330 - cell envelope integrity protein TolA, at 1,354,332 to 1,355,597 _06330 IAI46_06335: IAI46_06335 - Tol-Pal system protein TolB, at 1,355,730 to 1,357,022 _06335 IAI46_06340: IAI46_06340 - peptidoglycan-associated lipoprotein Pal, at 1,357,067 to 1,357,588 _06340 IAI46_06345: IAI46_06345 - cell division protein CpoB, at 1,357,598 to 1,358,398 _06345 Position (kb) 1355 1356 1357 1358Strain fitness (log2 ratio) -2 -1 0 1at 1355.564 kb on + strandat 1355.586 kb on - strandat 1355.586 kb on - strandat 1355.586 kb on - strandat 1355.595 kb on + strandat 1355.595 kb on + strandat 1355.607 kb on - strandat 1355.607 kb on - strandat 1355.607 kb on - strandat 1355.610 kb on + strandat 1355.610 kb on + strandat 1355.611 kb on - strandat 1355.630 kb on + strandat 1355.630 kb on + strandat 1355.630 kb on + strandat 1355.630 kb on + strandat 1355.630 kb on + strandat 1355.631 kb on - strandat 1355.631 kb on - strandat 1355.631 kb on - strandat 1355.631 kb on - strandat 1355.633 kb on + strandat 1355.633 kb on + strandat 1355.639 kb on - strandat 1355.639 kb on - strandat 1355.652 kb on + strandat 1355.652 kb on + strandat 1355.652 kb on + strandat 1355.652 kb on + strandat 1355.652 kb on + strandat 1355.653 kb on - strandat 1355.653 kb on - strandat 1355.656 kb on + strandat 1355.690 kb on + strandat 1355.695 kb on + strandat 1355.755 kb on + strandat 1356.234 kb on + strand, within IAI46_06335at 1356.434 kb on + strand, within IAI46_06335at 1356.639 kb on + strand, within IAI46_06335at 1356.900 kb on + strandat 1356.903 kb on - strandat 1356.917 kb on + strandat 1357.015 kb on - strandat 1357.035 kb on + strandat 1357.035 kb on + strandat 1357.035 kb on + strandat 1357.035 kb on + strandat 1357.035 kb on + strandat 1357.036 kb on - strandat 1357.039 kb on + strandat 1357.040 kb on - strandat 1357.049 kb on + strandat 1357.051 kb on + strandat 1357.060 kb on + strandat 1357.061 kb on - strandat 1357.132 kb on + strand, within IAI46_06340at 1357.380 kb on + strand, within IAI46_06340at 1357.531 kb on - strand, within IAI46_06340at 1357.559 kb on - strandat 1357.586 kb on + strandat 1357.606 kb on + strandat 1357.650 kb on + strandat 1357.690 kb on + strand, within IAI46_06345at 1357.690 kb on + strand, within IAI46_06345at 1357.805 kb on - strand, within IAI46_06345at 1357.841 kb on + strand, within IAI46_06345at 1357.888 kb on + strand, within IAI46_06345at 1358.002 kb on + strand, within IAI46_06345

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,355,564 + -0.1
1,355,586 - -0.0
1,355,586 - -0.3
1,355,586 - +0.5
1,355,595 + +0.0
1,355,595 + +0.3
1,355,607 - +0.1
1,355,607 - +0.4
1,355,607 - +0.3
1,355,610 + +0.5
1,355,610 + +0.2
1,355,611 - -0.4
1,355,630 + +0.9
1,355,630 + -0.1
1,355,630 + -0.0
1,355,630 + +0.6
1,355,630 + +0.9
1,355,631 - -0.5
1,355,631 - +1.0
1,355,631 - +0.2
1,355,631 - -0.7
1,355,633 + +0.4
1,355,633 + -0.2
1,355,639 - +0.0
1,355,639 - +0.4
1,355,652 + +0.5
1,355,652 + +0.7
1,355,652 + +0.3
1,355,652 + -0.3
1,355,652 + +0.2
1,355,653 - +0.6
1,355,653 - +0.2
1,355,656 + +0.1
1,355,690 + +0.4
1,355,695 + +0.5
1,355,755 + -1.5
1,356,234 + IAI46_06335 0.39 -0.5
1,356,434 + IAI46_06335 0.54 +0.5
1,356,639 + IAI46_06335 0.70 -0.7
1,356,900 + -0.1
1,356,903 - -1.3
1,356,917 + -1.5
1,357,015 - -0.5
1,357,035 + -0.9
1,357,035 + +0.2
1,357,035 + +0.1
1,357,035 + +0.1
1,357,035 + -0.3
1,357,036 - -1.7
1,357,039 + -0.0
1,357,040 - -0.1
1,357,049 + -0.1
1,357,051 + -0.4
1,357,060 + -1.3
1,357,061 - -0.5
1,357,132 + IAI46_06340 0.12 -1.9
1,357,380 + IAI46_06340 0.60 -0.7
1,357,531 - IAI46_06340 0.89 -0.1
1,357,559 - -1.6
1,357,586 + +0.9
1,357,606 + -1.1
1,357,650 + -1.7
1,357,690 + IAI46_06345 0.11 -0.6
1,357,690 + IAI46_06345 0.11 -0.3
1,357,805 - IAI46_06345 0.26 +0.3
1,357,841 + IAI46_06345 0.30 +0.6
1,357,888 + IAI46_06345 0.36 -0.9
1,358,002 + IAI46_06345 0.50 -1.0

Or see this region's nucleotide sequence