Strain Fitness in Serratia liquefaciens MT49 around IAI46_05770

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05760 and IAI46_05765 overlap by 4 nucleotidesIAI46_05765 and IAI46_05770 overlap by 4 nucleotidesIAI46_05770 and IAI46_05775 overlap by 4 nucleotidesIAI46_05775 and IAI46_05780 overlap by 4 nucleotides IAI46_05760: IAI46_05760 - RidA family protein, at 1,238,332 to 1,238,751 _05760 IAI46_05765: IAI46_05765 - fumarylacetoacetate hydrolase family protein, at 1,238,748 to 1,239,530 _05765 IAI46_05770: IAI46_05770 - 4-hydroxy-2-oxovalerate aldolase, at 1,239,527 to 1,240,564 _05770 IAI46_05775: IAI46_05775 - acetaldehyde dehydrogenase (acetylating), at 1,240,561 to 1,241,508 _05775 IAI46_05780: IAI46_05780 - fumarylacetoacetate hydrolase family protein, at 1,241,505 to 1,242,275 _05780 Position (kb) 1239 1240 1241Strain fitness (log2 ratio) -1 0 1at 1238.628 kb on + strand, within IAI46_05760at 1238.698 kb on - strand, within IAI46_05760at 1238.727 kb on + strandat 1238.746 kb on - strandat 1238.751 kb on + strandat 1238.751 kb on + strandat 1238.751 kb on + strandat 1238.752 kb on - strandat 1238.752 kb on - strandat 1238.796 kb on - strandat 1238.877 kb on + strand, within IAI46_05765at 1238.913 kb on + strand, within IAI46_05765at 1238.914 kb on - strand, within IAI46_05765at 1238.942 kb on + strand, within IAI46_05765at 1238.942 kb on + strand, within IAI46_05765at 1239.136 kb on - strand, within IAI46_05765at 1239.299 kb on + strand, within IAI46_05765at 1239.299 kb on + strand, within IAI46_05765at 1239.300 kb on - strand, within IAI46_05765at 1239.300 kb on - strand, within IAI46_05765at 1239.489 kb on + strandat 1239.509 kb on + strandat 1239.592 kb on + strandat 1239.593 kb on - strandat 1239.613 kb on + strandat 1239.635 kb on + strand, within IAI46_05770at 1239.635 kb on + strand, within IAI46_05770at 1239.635 kb on + strand, within IAI46_05770at 1239.636 kb on - strand, within IAI46_05770at 1239.702 kb on + strand, within IAI46_05770at 1239.746 kb on + strand, within IAI46_05770at 1239.959 kb on + strand, within IAI46_05770at 1239.960 kb on - strand, within IAI46_05770at 1239.960 kb on - strand, within IAI46_05770at 1239.965 kb on - strand, within IAI46_05770at 1239.965 kb on - strand, within IAI46_05770at 1240.075 kb on - strand, within IAI46_05770at 1240.075 kb on - strand, within IAI46_05770at 1240.075 kb on - strand, within IAI46_05770at 1240.075 kb on - strand, within IAI46_05770at 1240.191 kb on + strand, within IAI46_05770at 1240.192 kb on - strand, within IAI46_05770at 1240.195 kb on + strand, within IAI46_05770at 1240.195 kb on + strand, within IAI46_05770at 1240.196 kb on - strand, within IAI46_05770at 1240.196 kb on - strand, within IAI46_05770at 1240.196 kb on - strand, within IAI46_05770at 1240.196 kb on - strand, within IAI46_05770at 1240.196 kb on - strand, within IAI46_05770at 1240.266 kb on + strand, within IAI46_05770at 1240.266 kb on + strand, within IAI46_05770at 1240.267 kb on - strand, within IAI46_05770at 1240.543 kb on + strandat 1240.545 kb on + strandat 1240.657 kb on + strand, within IAI46_05775at 1240.657 kb on + strand, within IAI46_05775at 1241.054 kb on + strand, within IAI46_05775at 1241.054 kb on + strand, within IAI46_05775at 1241.058 kb on - strand, within IAI46_05775at 1241.125 kb on - strand, within IAI46_05775at 1241.164 kb on + strand, within IAI46_05775at 1241.173 kb on + strand, within IAI46_05775at 1241.173 kb on + strand, within IAI46_05775at 1241.173 kb on + strand, within IAI46_05775at 1241.173 kb on + strand, within IAI46_05775at 1241.173 kb on + strand, within IAI46_05775at 1241.174 kb on - strand, within IAI46_05775at 1241.174 kb on - strand, within IAI46_05775at 1241.174 kb on - strand, within IAI46_05775at 1241.178 kb on - strand, within IAI46_05775at 1241.178 kb on - strand, within IAI46_05775at 1241.239 kb on - strand, within IAI46_05775at 1241.439 kb on + strandat 1241.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,238,628 + IAI46_05760 0.70 +1.2
1,238,698 - IAI46_05760 0.87 +0.5
1,238,727 + -1.3
1,238,746 - +0.9
1,238,751 + -0.4
1,238,751 + +0.6
1,238,751 + -1.7
1,238,752 - -0.1
1,238,752 - -0.4
1,238,796 - -0.2
1,238,877 + IAI46_05765 0.16 +0.3
1,238,913 + IAI46_05765 0.21 +0.3
1,238,914 - IAI46_05765 0.21 -0.6
1,238,942 + IAI46_05765 0.25 -0.8
1,238,942 + IAI46_05765 0.25 +0.7
1,239,136 - IAI46_05765 0.50 -0.8
1,239,299 + IAI46_05765 0.70 -0.8
1,239,299 + IAI46_05765 0.70 +0.2
1,239,300 - IAI46_05765 0.70 -0.2
1,239,300 - IAI46_05765 0.70 +1.1
1,239,489 + +0.3
1,239,509 + -0.5
1,239,592 + -1.2
1,239,593 - +0.4
1,239,613 + +0.3
1,239,635 + IAI46_05770 0.10 +0.1
1,239,635 + IAI46_05770 0.10 -0.2
1,239,635 + IAI46_05770 0.10 -0.3
1,239,636 - IAI46_05770 0.11 +0.9
1,239,702 + IAI46_05770 0.17 +0.7
1,239,746 + IAI46_05770 0.21 +0.2
1,239,959 + IAI46_05770 0.42 +0.9
1,239,960 - IAI46_05770 0.42 +0.3
1,239,960 - IAI46_05770 0.42 -1.5
1,239,965 - IAI46_05770 0.42 +0.1
1,239,965 - IAI46_05770 0.42 -0.1
1,240,075 - IAI46_05770 0.53 -0.6
1,240,075 - IAI46_05770 0.53 -0.2
1,240,075 - IAI46_05770 0.53 +0.4
1,240,075 - IAI46_05770 0.53 +0.7
1,240,191 + IAI46_05770 0.64 -0.4
1,240,192 - IAI46_05770 0.64 +0.2
1,240,195 + IAI46_05770 0.64 +0.9
1,240,195 + IAI46_05770 0.64 -0.5
1,240,196 - IAI46_05770 0.64 -0.4
1,240,196 - IAI46_05770 0.64 -0.2
1,240,196 - IAI46_05770 0.64 +0.3
1,240,196 - IAI46_05770 0.64 -0.3
1,240,196 - IAI46_05770 0.64 -0.0
1,240,266 + IAI46_05770 0.71 -0.4
1,240,266 + IAI46_05770 0.71 +0.3
1,240,267 - IAI46_05770 0.71 -0.2
1,240,543 + +0.6
1,240,545 + -0.5
1,240,657 + IAI46_05775 0.10 -0.3
1,240,657 + IAI46_05775 0.10 +0.3
1,241,054 + IAI46_05775 0.52 +0.1
1,241,054 + IAI46_05775 0.52 +0.6
1,241,058 - IAI46_05775 0.52 +1.5
1,241,125 - IAI46_05775 0.59 -0.9
1,241,164 + IAI46_05775 0.64 -1.1
1,241,173 + IAI46_05775 0.65 -1.3
1,241,173 + IAI46_05775 0.65 +0.2
1,241,173 + IAI46_05775 0.65 +1.3
1,241,173 + IAI46_05775 0.65 +0.2
1,241,173 + IAI46_05775 0.65 -0.9
1,241,174 - IAI46_05775 0.65 +0.1
1,241,174 - IAI46_05775 0.65 -0.3
1,241,174 - IAI46_05775 0.65 +0.9
1,241,178 - IAI46_05775 0.65 +0.7
1,241,178 - IAI46_05775 0.65 -0.3
1,241,239 - IAI46_05775 0.72 +0.1
1,241,439 + -0.1
1,241,440 - -0.3

Or see this region's nucleotide sequence