Strain Fitness in Serratia liquefaciens MT49 around IAI46_05390

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_05380 and IAI46_05385 are separated by 10 nucleotidesIAI46_05385 and IAI46_05390 are separated by 309 nucleotidesIAI46_05390 and IAI46_05395 are separated by 68 nucleotidesIAI46_05395 and IAI46_05400 are separated by 10 nucleotides IAI46_05380: IAI46_05380 - UDP-2,3-diacylglucosamine diphosphatase, at 1,160,435 to 1,161,157 _05380 IAI46_05385: IAI46_05385 - peptidylprolyl isomerase B, at 1,161,168 to 1,161,662 _05385 IAI46_05390: IAI46_05390 - cysteine--tRNA ligase, at 1,161,972 to 1,163,357 _05390 IAI46_05395: IAI46_05395 - ribosome-associated protein YbcJ, at 1,163,426 to 1,163,638 _05395 IAI46_05400: IAI46_05400 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,163,649 to 1,164,515 _05400 Position (kb) 1161 1162 1163 1164Strain fitness (log2 ratio) -1 0 1at 1161.298 kb on - strand, within IAI46_05385at 1161.675 kb on - strandat 1161.730 kb on - strandat 1161.730 kb on - strandat 1161.730 kb on - strandat 1161.734 kb on + strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.744 kb on - strandat 1161.744 kb on - strandat 1161.804 kb on + strandat 1161.828 kb on + strandat 1161.880 kb on + strandat 1163.351 kb on + strandat 1163.356 kb on - strandat 1163.365 kb on + strandat 1163.366 kb on - strandat 1163.371 kb on - strandat 1163.435 kb on - strandat 1163.438 kb on + strandat 1163.438 kb on + strandat 1163.439 kb on - strandat 1163.439 kb on - strandat 1163.647 kb on - strandat 1163.650 kb on + strandat 1163.651 kb on - strandat 1163.655 kb on - strandat 1163.671 kb on + strandat 1163.672 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
1,161,298 - IAI46_05385 0.26 +0.2
1,161,675 - +0.8
1,161,730 - -1.0
1,161,730 - +0.3
1,161,730 - -0.1
1,161,734 + -0.3
1,161,735 - -0.3
1,161,735 - +0.0
1,161,735 - -0.2
1,161,735 - -0.9
1,161,735 - -0.1
1,161,735 - +0.6
1,161,735 - -0.0
1,161,744 - +0.1
1,161,744 - +0.8
1,161,804 + -0.9
1,161,828 + -0.3
1,161,880 + -1.3
1,163,351 + +0.8
1,163,356 - -0.2
1,163,365 + -0.0
1,163,366 - -0.4
1,163,371 - +1.1
1,163,435 - +0.3
1,163,438 + +1.4
1,163,438 + -0.2
1,163,439 - -0.0
1,163,439 - +0.3
1,163,647 - +0.1
1,163,650 + +0.4
1,163,651 - -0.7
1,163,655 - -0.9
1,163,671 + +0.3
1,163,672 - +0.2

Or see this region's nucleotide sequence