Experiment: No stress control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_05380 and IAI46_05385 are separated by 10 nucleotides IAI46_05385 and IAI46_05390 are separated by 309 nucleotides IAI46_05390 and IAI46_05395 are separated by 68 nucleotides IAI46_05395 and IAI46_05400 are separated by 10 nucleotides
IAI46_05380: IAI46_05380 - UDP-2,3-diacylglucosamine diphosphatase, at 1,160,435 to 1,161,157
_05380
IAI46_05385: IAI46_05385 - peptidylprolyl isomerase B, at 1,161,168 to 1,161,662
_05385
IAI46_05390: IAI46_05390 - cysteine--tRNA ligase, at 1,161,972 to 1,163,357
_05390
IAI46_05395: IAI46_05395 - ribosome-associated protein YbcJ, at 1,163,426 to 1,163,638
_05395
IAI46_05400: IAI46_05400 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,163,649 to 1,164,515
_05400
Position (kb)
1161
1162
1163
1164 Strain fitness (log2 ratio)
-1
0
1 at 1161.298 kb on - strand, within IAI46_05385 at 1161.675 kb on - strand at 1161.730 kb on - strand at 1161.730 kb on - strand at 1161.730 kb on - strand at 1161.734 kb on + strand at 1161.735 kb on - strand at 1161.735 kb on - strand at 1161.735 kb on - strand at 1161.735 kb on - strand at 1161.735 kb on - strand at 1161.735 kb on - strand at 1161.735 kb on - strand at 1161.744 kb on - strand at 1161.744 kb on - strand at 1161.804 kb on + strand at 1161.828 kb on + strand at 1161.880 kb on + strand at 1163.351 kb on + strand at 1163.356 kb on - strand at 1163.365 kb on + strand at 1163.366 kb on - strand at 1163.371 kb on - strand at 1163.435 kb on - strand at 1163.438 kb on + strand at 1163.438 kb on + strand at 1163.439 kb on - strand at 1163.439 kb on - strand at 1163.647 kb on - strand at 1163.650 kb on + strand at 1163.651 kb on - strand at 1163.655 kb on - strand at 1163.671 kb on + strand at 1163.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, aerobic remove 1,161,298 - IAI46_05385 0.26 +0.2 1,161,675 - +0.8 1,161,730 - -1.0 1,161,730 - +0.3 1,161,730 - -0.1 1,161,734 + -0.3 1,161,735 - -0.3 1,161,735 - +0.0 1,161,735 - -0.2 1,161,735 - -0.9 1,161,735 - -0.1 1,161,735 - +0.6 1,161,735 - -0.0 1,161,744 - +0.1 1,161,744 - +0.8 1,161,804 + -0.9 1,161,828 + -0.3 1,161,880 + -1.3 1,163,351 + +0.8 1,163,356 - -0.2 1,163,365 + -0.0 1,163,366 - -0.4 1,163,371 - +1.1 1,163,435 - +0.3 1,163,438 + +1.4 1,163,438 + -0.2 1,163,439 - -0.0 1,163,439 - +0.3 1,163,647 - +0.1 1,163,650 + +0.4 1,163,651 - -0.7 1,163,655 - -0.9 1,163,671 + +0.3 1,163,672 - +0.2
Or see this region's nucleotide sequence