Strain Fitness in Serratia liquefaciens MT49 around IAI46_05250

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05245 and IAI46_05250 are separated by 203 nucleotidesIAI46_05250 and IAI46_05255 are separated by 166 nucleotides IAI46_05245: IAI46_05245 - molecular chaperone HtpG, at 1,127,211 to 1,129,076 _05245 IAI46_05250: IAI46_05250 - adenylate kinase, at 1,129,280 to 1,129,924 _05250 IAI46_05255: IAI46_05255 - helix-turn-helix domain-containing protein, at 1,130,091 to 1,131,224 _05255 Position (kb) 1129 1130Strain fitness (log2 ratio) -1 0 1 2at 1128.315 kb on + strand, within IAI46_05245at 1128.459 kb on + strand, within IAI46_05245at 1128.460 kb on - strand, within IAI46_05245at 1128.495 kb on + strand, within IAI46_05245at 1128.498 kb on + strand, within IAI46_05245at 1128.516 kb on + strand, within IAI46_05245at 1128.516 kb on + strand, within IAI46_05245at 1128.517 kb on - strand, within IAI46_05245at 1128.517 kb on - strand, within IAI46_05245at 1128.517 kb on - strand, within IAI46_05245at 1128.517 kb on - strand, within IAI46_05245at 1128.517 kb on - strand, within IAI46_05245at 1128.517 kb on - strand, within IAI46_05245at 1128.615 kb on + strand, within IAI46_05245at 1128.615 kb on + strand, within IAI46_05245at 1128.616 kb on - strand, within IAI46_05245at 1128.813 kb on - strand, within IAI46_05245at 1129.044 kb on - strandat 1129.085 kb on - strandat 1129.085 kb on - strandat 1129.086 kb on + strandat 1129.086 kb on + strandat 1129.087 kb on - strandat 1129.087 kb on - strandat 1129.087 kb on - strandat 1129.087 kb on - strandat 1129.087 kb on - strandat 1129.088 kb on + strandat 1129.089 kb on - strandat 1129.089 kb on - strandat 1129.089 kb on - strandat 1129.089 kb on - strandat 1129.089 kb on - strandat 1129.197 kb on - strandat 1129.982 kb on + strandat 1130.054 kb on + strandat 1130.054 kb on + strandat 1130.054 kb on + strandat 1130.055 kb on - strandat 1130.056 kb on + strandat 1130.056 kb on + strandat 1130.056 kb on + strandat 1130.057 kb on - strandat 1130.070 kb on + strandat 1130.363 kb on - strand, within IAI46_05255at 1130.375 kb on + strand, within IAI46_05255at 1130.398 kb on + strand, within IAI46_05255at 1130.398 kb on + strand, within IAI46_05255at 1130.407 kb on - strand, within IAI46_05255at 1130.569 kb on + strand, within IAI46_05255at 1130.779 kb on + strand, within IAI46_05255at 1130.779 kb on + strand, within IAI46_05255at 1130.908 kb on + strand, within IAI46_05255at 1130.909 kb on - strand, within IAI46_05255

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,128,315 + IAI46_05245 0.59 +1.0
1,128,459 + IAI46_05245 0.67 +0.3
1,128,460 - IAI46_05245 0.67 -0.8
1,128,495 + IAI46_05245 0.69 +0.1
1,128,498 + IAI46_05245 0.69 -0.8
1,128,516 + IAI46_05245 0.70 +0.3
1,128,516 + IAI46_05245 0.70 +0.3
1,128,517 - IAI46_05245 0.70 +0.7
1,128,517 - IAI46_05245 0.70 -0.1
1,128,517 - IAI46_05245 0.70 -0.0
1,128,517 - IAI46_05245 0.70 -0.9
1,128,517 - IAI46_05245 0.70 +0.5
1,128,517 - IAI46_05245 0.70 -0.1
1,128,615 + IAI46_05245 0.75 -0.5
1,128,615 + IAI46_05245 0.75 +0.1
1,128,616 - IAI46_05245 0.75 -1.5
1,128,813 - IAI46_05245 0.86 -0.3
1,129,044 - -0.2
1,129,085 - -0.5
1,129,085 - +0.1
1,129,086 + +0.5
1,129,086 + -0.6
1,129,087 - +0.2
1,129,087 - +1.3
1,129,087 - -0.5
1,129,087 - +0.0
1,129,087 - -0.6
1,129,088 + +0.6
1,129,089 - +2.4
1,129,089 - -0.8
1,129,089 - +0.6
1,129,089 - -0.0
1,129,089 - -0.6
1,129,197 - +0.2
1,129,982 + -1.6
1,130,054 + -0.5
1,130,054 + +0.8
1,130,054 + -0.2
1,130,055 - -0.1
1,130,056 + +0.8
1,130,056 + -0.2
1,130,056 + -0.3
1,130,057 - -0.4
1,130,070 + +0.3
1,130,363 - IAI46_05255 0.24 +0.3
1,130,375 + IAI46_05255 0.25 +0.5
1,130,398 + IAI46_05255 0.27 -0.2
1,130,398 + IAI46_05255 0.27 +0.3
1,130,407 - IAI46_05255 0.28 +1.0
1,130,569 + IAI46_05255 0.42 -0.3
1,130,779 + IAI46_05255 0.61 +0.5
1,130,779 + IAI46_05255 0.61 -0.3
1,130,908 + IAI46_05255 0.72 +0.3
1,130,909 - IAI46_05255 0.72 +0.8

Or see this region's nucleotide sequence