Strain Fitness in Serratia liquefaciens MT49 around IAI46_04730

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04725 and IAI46_04730 are separated by 148 nucleotidesIAI46_04730 and IAI46_04735 are separated by 62 nucleotidesIAI46_04735 and IAI46_04740 are separated by 11 nucleotides IAI46_04725: IAI46_04725 - ribose ABC transporter permease, at 1,013,382 to 1,014,371 _04725 IAI46_04730: IAI46_04730 - ABC transporter substrate-binding protein, at 1,014,520 to 1,015,461 _04730 IAI46_04735: IAI46_04735 - D-lyxose/D-mannose family sugar isomerase, at 1,015,524 to 1,016,210 _04735 IAI46_04740: IAI46_04740 - ketose 1,6-bisphosphate aldolase, at 1,016,222 to 1,017,082 _04740 Position (kb) 1014 1015 1016Strain fitness (log2 ratio) -1 0 1 2at 1013.547 kb on - strand, within IAI46_04725at 1013.597 kb on + strand, within IAI46_04725at 1013.597 kb on + strand, within IAI46_04725at 1013.597 kb on + strand, within IAI46_04725at 1013.598 kb on - strand, within IAI46_04725at 1013.744 kb on + strand, within IAI46_04725at 1013.783 kb on + strand, within IAI46_04725at 1013.798 kb on + strand, within IAI46_04725at 1013.802 kb on + strand, within IAI46_04725at 1013.802 kb on + strand, within IAI46_04725at 1013.802 kb on + strand, within IAI46_04725at 1013.803 kb on - strand, within IAI46_04725at 1013.892 kb on + strand, within IAI46_04725at 1013.893 kb on - strand, within IAI46_04725at 1013.893 kb on - strand, within IAI46_04725at 1013.921 kb on + strand, within IAI46_04725at 1013.922 kb on - strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.988 kb on + strand, within IAI46_04725at 1013.989 kb on - strand, within IAI46_04725at 1013.989 kb on - strand, within IAI46_04725at 1014.118 kb on - strand, within IAI46_04725at 1014.147 kb on + strand, within IAI46_04725at 1014.345 kb on + strandat 1014.360 kb on + strandat 1014.374 kb on + strandat 1014.519 kb on + strandat 1014.519 kb on + strandat 1014.519 kb on + strandat 1014.703 kb on - strand, within IAI46_04730at 1014.875 kb on + strand, within IAI46_04730at 1014.939 kb on + strand, within IAI46_04730at 1014.939 kb on + strand, within IAI46_04730at 1014.940 kb on - strand, within IAI46_04730at 1014.940 kb on - strand, within IAI46_04730at 1014.943 kb on + strand, within IAI46_04730at 1014.943 kb on + strand, within IAI46_04730at 1014.944 kb on - strand, within IAI46_04730at 1014.944 kb on - strand, within IAI46_04730at 1015.075 kb on + strand, within IAI46_04730at 1015.075 kb on + strand, within IAI46_04730at 1015.076 kb on - strand, within IAI46_04730at 1015.078 kb on - strand, within IAI46_04730at 1015.420 kb on - strandat 1015.420 kb on - strandat 1015.438 kb on + strandat 1015.439 kb on - strandat 1015.439 kb on - strandat 1015.459 kb on + strandat 1015.459 kb on + strandat 1015.483 kb on + strandat 1015.613 kb on + strand, within IAI46_04735at 1015.614 kb on - strand, within IAI46_04735at 1015.660 kb on + strand, within IAI46_04735at 1015.771 kb on - strand, within IAI46_04735at 1015.771 kb on - strand, within IAI46_04735at 1015.771 kb on - strand, within IAI46_04735at 1016.032 kb on - strand, within IAI46_04735at 1016.032 kb on - strand, within IAI46_04735at 1016.032 kb on - strand, within IAI46_04735at 1016.141 kb on + strand, within IAI46_04735at 1016.183 kb on + strandat 1016.190 kb on + strandat 1016.201 kb on + strandat 1016.209 kb on - strandat 1016.273 kb on + strandat 1016.366 kb on - strand, within IAI46_04740at 1016.387 kb on + strand, within IAI46_04740

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,013,547 - IAI46_04725 0.17 -0.3
1,013,597 + IAI46_04725 0.22 +0.2
1,013,597 + IAI46_04725 0.22 +0.1
1,013,597 + IAI46_04725 0.22 -0.9
1,013,598 - IAI46_04725 0.22 -0.7
1,013,744 + IAI46_04725 0.37 -1.4
1,013,783 + IAI46_04725 0.41 +1.3
1,013,798 + IAI46_04725 0.42 +0.3
1,013,802 + IAI46_04725 0.42 +1.1
1,013,802 + IAI46_04725 0.42 -0.3
1,013,802 + IAI46_04725 0.42 -0.3
1,013,803 - IAI46_04725 0.43 -0.2
1,013,892 + IAI46_04725 0.52 +0.1
1,013,893 - IAI46_04725 0.52 +0.8
1,013,893 - IAI46_04725 0.52 -0.2
1,013,921 + IAI46_04725 0.54 +0.1
1,013,922 - IAI46_04725 0.55 +0.9
1,013,984 + IAI46_04725 0.61 -0.5
1,013,984 + IAI46_04725 0.61 -0.6
1,013,984 + IAI46_04725 0.61 +0.4
1,013,984 + IAI46_04725 0.61 +0.3
1,013,984 + IAI46_04725 0.61 +0.4
1,013,985 - IAI46_04725 0.61 -0.4
1,013,985 - IAI46_04725 0.61 -0.4
1,013,985 - IAI46_04725 0.61 +0.6
1,013,985 - IAI46_04725 0.61 -0.8
1,013,988 + IAI46_04725 0.61 -0.2
1,013,989 - IAI46_04725 0.61 +1.2
1,013,989 - IAI46_04725 0.61 -0.1
1,014,118 - IAI46_04725 0.74 -0.0
1,014,147 + IAI46_04725 0.77 -0.3
1,014,345 + -0.1
1,014,360 + +0.0
1,014,374 + -0.2
1,014,519 + -0.2
1,014,519 + +0.3
1,014,519 + -0.3
1,014,703 - IAI46_04730 0.19 -0.0
1,014,875 + IAI46_04730 0.38 -0.5
1,014,939 + IAI46_04730 0.44 +0.4
1,014,939 + IAI46_04730 0.44 +0.5
1,014,940 - IAI46_04730 0.45 +0.3
1,014,940 - IAI46_04730 0.45 +0.7
1,014,943 + IAI46_04730 0.45 -0.1
1,014,943 + IAI46_04730 0.45 -0.1
1,014,944 - IAI46_04730 0.45 +0.5
1,014,944 - IAI46_04730 0.45 +0.6
1,015,075 + IAI46_04730 0.59 +0.1
1,015,075 + IAI46_04730 0.59 +0.4
1,015,076 - IAI46_04730 0.59 -0.2
1,015,078 - IAI46_04730 0.59 -0.0
1,015,420 - +0.3
1,015,420 - +0.4
1,015,438 + -0.1
1,015,439 - +0.1
1,015,439 - +0.3
1,015,459 + +0.3
1,015,459 + -0.1
1,015,483 + +0.8
1,015,613 + IAI46_04735 0.13 -0.1
1,015,614 - IAI46_04735 0.13 +1.8
1,015,660 + IAI46_04735 0.20 +1.0
1,015,771 - IAI46_04735 0.36 -0.2
1,015,771 - IAI46_04735 0.36 +0.7
1,015,771 - IAI46_04735 0.36 +0.8
1,016,032 - IAI46_04735 0.74 +0.2
1,016,032 - IAI46_04735 0.74 +0.3
1,016,032 - IAI46_04735 0.74 +1.7
1,016,141 + IAI46_04735 0.90 +0.4
1,016,183 + -0.4
1,016,190 + -0.2
1,016,201 + -0.1
1,016,209 - -0.2
1,016,273 + +0.6
1,016,366 - IAI46_04740 0.17 +0.3
1,016,387 + IAI46_04740 0.19 +0.6

Or see this region's nucleotide sequence